RNA id: CI01000304_02672677_02672967.mRNA



Basic Information


Item Value
RNA id CI01000304_02672677_02672967.mRNA
length 829
RNA type mRNA
GC content 0.37
exon number 1
gene id CI01000304_02672677_02672967
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2672620 ~ 2673448 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATATCAGCAGACAATAAGAGATGCATATGTGTTACCAAAACTGGAGGACACTTTCATGGCTTTAACTGGATCAAAGTGGTTCTCAGTTCTGGTCCTAAAGTCTGGATACTACCAAATTGAGGTTGAGGAGAAGGACAAAGCAAAGACCGCCCTTGTGTTCCCTTTGGGGTTTTACAAATTTAATCATATGCCGCAGGGAGTGACTAATGCTCCAAGTACTTTTCAACGAATAATGGAGAAATGCATGACTGACATAAATCTCGAAGAGATCCTTGTATTCATTGATGACATCATTGTTTTCTCCAAGCACTTAGAAGAGCACAAGGAAAGATTGATGAGTTCTTAACAGGCTCAAGGACTAAAACTAGCCCCAGAGAAGTTTTTTTGCGCAATCCTCAGTAAAGTACTGAAATAAGGTAGCTGCTGTAAAAACCTGGCCAATCAAAAAAAAAAAAAAAAAAAAAATTAAAGGAATTAAAATCTTTCCTTGTTCATTGGTTACTATCATCGATTCATCAAGGACTTTTCCAAGAAGATCAGACCCCTCAATTAATTGACTTCTGGGTATCCACCTACCCGAAAGAATTTGAAGTCAAAGCATGATACCAGATATTACAACCCAGAAGAGTCCTTCAGTGGAAGGTGGACCACCTCTTGCCAGGAAGCATTTGATCTAATCATTAAGGAACTGAAAGATGAAAGTGTTAGGCAGAAACATCCTAATATGGAGAAAACAGACGTCAAAACAACACAACTCAAACTAAATAGGAAGATTTGAAGGGTTTATTTCCTCAAAAAGATTTAGATGTTTATTGTCAAAGTATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU481477 lncRNA upstream 13205 2659123 ~ 2659415 (+) True G419162
TU481429 lncRNA upstream 121863 2538432 ~ 2550757 (+) True G419115
TU481430 lncRNA upstream 125412 2487777 ~ 2547208 (+) True G419116
TU481428 lncRNA upstream 187320 2484922 ~ 2485300 (+) True G419114
TU481427 lncRNA upstream 188018 2484332 ~ 2484602 (+) True G419113
TU481909 lncRNA downstream 12362 2685810 ~ 2690848 (+) True G419542
TU482012 lncRNA downstream 126106 2799554 ~ 2799821 (+) True G419635
TU482013 lncRNA downstream 126970 2800418 ~ 2800636 (+) True G419636
TU482024 lncRNA downstream 145493 2818941 ~ 2819261 (+) True G419647
TU482111 lncRNA downstream 268248 2941696 ~ 2941950 (+) True G419724
CI01000304_02558750_02584199.mRNA mRNA upstream 87425 2558750 ~ 2585195 (+) True CI01000304_02558750_02584199
CI01000304_02267341_02290220.mRNA mRNA upstream 382337 2267341 ~ 2290283 (+) True CI01000304_02267341_02290220
CI01000304_02254859_02262580.mRNA mRNA upstream 408542 2253894 ~ 2264078 (+) False CI01000304_02254859_02262580
CI01000304_02236583_02240921.mRNA mRNA upstream 431012 2236367 ~ 2241608 (+) True CI01000304_02236583_02240921
CI01000304_02229520_02235812.mRNA mRNA upstream 436416 2229139 ~ 2236204 (+) True CI01000304_02229520_02235812
CI01000304_02810127_02814735.mRNA mRNA downstream 136679 2810127 ~ 2815076 (+) True CI01000304_02810127_02814735
CI01000304_02993734_03052509.mRNA mRNA downstream 320286 2993734 ~ 3052509 (+) False CI01000304_02993734_03052509
CI01000304_03127839_03154603.mRNA mRNA downstream 453145 3126593 ~ 3154797 (+) True CI01000304_03127839_03154603
CI01000304_03193646_03207372.mRNA mRNA downstream 519940 3193388 ~ 3208382 (+) True CI01000304_03193646_03207372
CI01000304_03261474_03267659.mRNA mRNA downstream 588026 3261474 ~ 3268074 (+) True CI01000304_03261474_03267659
TU481280 other upstream 578942 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 1797371 872670 ~ 875249 (+) True G418116
TU480224 other upstream 2108169 558092 ~ 564451 (+) True G418059
TU480131 other upstream 2444767 226703 ~ 227853 (+) True G417987
TU482914 other downstream 1629888 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 2499775 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 3567785 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 4679201 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 4810693 7484141 ~ 7484688 (+) True G421435

Expression Profile