RNA id: CI01000304_03127839_03154603.mRNA



Basic Information


Item Value
RNA id CI01000304_03127839_03154603.mRNA
length 1686
RNA type mRNA
GC content 0.37
exon number 2
gene id CI01000304_03127839_03154603
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 3126593 ~ 3154797 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAAAACAGCCATCCCAGGGAACTCCCATGCTGCCCTTTTGCAACTCCCACCCTGAGTTAAATGATTCTGCAGGGTGTGAATCAGCTACGCAGGATGCTAGAAGGTCTCAGTGTTTCAGTTTACGCTGCTTGCCTTTGTTTCAACCCGTGCTTACATCAGGAACAACTGAATTGGTTATTCTCTGAGGCATGTGAATATTAAAAGGTCACGTCATTTGTAATACAAAGAAACAGTGGCTATCACGTCAACACAGTCTAGAGGCGCTGTCCATAAACAAACCTGAATTATTTACTGTCTCGACTAAGCCAAGTGTAACTACATGTTAGTTTAAATGCTCTAATGAAGCATAAAGTTTGTTGTATTTGAAGAACTTTCTAGTGACCTTGGTAGGAGGCGACTTTTGCTGTTGTTTTCAAGATTTCTTGTTAGATGACATGTTTACTAGCCATAAAATGATGATAAATACTCCTGTCTGAATTTTTTCAAATTTTCAATGTTAATGTCTTAAATTATACTTCTTGACAGCAATGGCATTAAACTGAGTACAAATTGAGATTTCTACTGCAGTCTCCTGCTACTTTTCTCTAGTTTTCTCAAACTAAAGTCATAAGCCATACACTAGCATTCAAATGTTTTCTTTTTTTATTATTTTTATTTTTATTATTATTATTTATTATATATATATATATATATATATATCCCTCTACCGCATGGTGTTGCCATATGGCAACATACTCTTTGCGTTCATTTCCTTGCCACTGAGACAGCATTGAAGCACTGAAGAGACTTGAAGAGAACATTCTCGGTTTTTTTTTTTGTTGGTGAGAGAAGACCTTAGTTTAGCCAATGTTGTGCTTTGGTTAAGTCACATGACATGCAATTTTTTTCTGTGGCGCGATTTCTGACAGACTGCTGTCTCTTGTCGGTAGTTGCTGAAAGCAAACTAAAATGTCAGTAACAAATAAGGACCAGTCCATGTCACATTCACAAAAAAATTGGTAACATCATCTCAGGTAAGTTATGATGACATATTCACCACTCAAAAAAGTTTTTATGAAAATAGTTTTTGGTAAATCGATAAAATGTCTGTGTTGCCATATGGCAACACTGTGCAATAATGGAATGACATTATTGTAATAGGTTAGCTAGCAAGCAAAGGTCAGCTGCAGTCTGTTAAGCTGTAACAATAACAACATTAATGCTAGTGATATAATGTTGATTAGTCATATGTTAAGAACTGCCATGGCATTTGTATTATGGATTAAATCAACATCGGAGACCTGCCTGCCCACTGCCACCACAGCCAGTACTACTGGCCCAGACCTACCACTGGCCTACCATGGTGTCTCAAAAAGGCAGGTGCAAGTGGCTATGTATCCTCCATCTTGGGCCTGCTGTGAACTGCAGACAACTTCCCAGACAGGAAAGTGCAAGGCTAAGAAAGATGATCTCATCCTTGCAAGTTACAGCAATGAGAAGTCAGACTGAATAAGTGGCTTCAAGTAAATATGGATAATGAGGATGATTATCTTAAATTTTAAAGCGAATTAGCACAAGTAATATTTCAATTGCAATCTGTTTTTTACATTTTAAATGGATAATGCATTGCTGTTTATTTACAGTCATATTTACCACTTTCTCTATCTTGTAACCTATAAAAAAATAAGAATACCCCACCAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU482206 lncRNA upstream 30655 3095705 ~ 3095938 (+) True G419808
TU482204 lncRNA upstream 42248 3084123 ~ 3084345 (+) True G419806
TU482200 lncRNA upstream 48784 3077603 ~ 3077809 (+) True G419802
TU482186 lncRNA upstream 71602 3048746 ~ 3054991 (+) True CI01000304_02993734_03052509
TU482111 lncRNA upstream 184643 2941696 ~ 2941950 (+) True G419724
TU482262 lncRNA downstream 14637 3169434 ~ 3306051 (+) True G419862
TU482278 lncRNA downstream 132604 3287401 ~ 3379400 (+) True G419875
TU482343 lncRNA downstream 226726 3381523 ~ 3381763 (+) True G419937
TU482346 lncRNA downstream 234380 3389177 ~ 3389441 (+) True G419940
TU482520 lncRNA downstream 537903 3692700 ~ 3695368 (+) True G420104
CI01000304_02993734_03052509.mRNA mRNA upstream 74084 2993734 ~ 3052509 (+) False CI01000304_02993734_03052509
CI01000304_02810127_02814735.mRNA mRNA upstream 311517 2810127 ~ 2815076 (+) True CI01000304_02810127_02814735
CI01000304_02672677_02672967.mRNA mRNA upstream 453145 2672620 ~ 2673448 (+) True CI01000304_02672677_02672967
CI01000304_02558750_02584199.mRNA mRNA upstream 541398 2558750 ~ 2585195 (+) True CI01000304_02558750_02584199
CI01000304_02267341_02290220.mRNA mRNA upstream 836310 2267341 ~ 2290283 (+) True CI01000304_02267341_02290220
CI01000304_03193646_03207372.mRNA mRNA downstream 38591 3193388 ~ 3208382 (+) True CI01000304_03193646_03207372
CI01000304_03261474_03267659.mRNA mRNA downstream 106677 3261474 ~ 3268074 (+) True CI01000304_03261474_03267659
CI01000304_03278369_03283013.mRNA mRNA downstream 121511 3276308 ~ 3283183 (+) True CI01000304_03278369_03283013
CI01000304_03353284_03357099.mRNA mRNA downstream 196944 3351741 ~ 3357564 (+) True CI01000304_03353284_03357099
CI01000304_03376929_03378015.mRNA mRNA downstream 222074 3376871 ~ 3378183 (+) True CI01000304_03376929_03378015
TU481280 other upstream 1032915 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 2251344 872670 ~ 875249 (+) True G418116
TU480224 other upstream 2562142 558092 ~ 564451 (+) True G418059
TU480131 other upstream 2898740 226703 ~ 227853 (+) True G417987
TU482914 other downstream 1148539 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 2018426 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 3086436 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 4197852 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 4329344 7484141 ~ 7484688 (+) True G421435

Expression Profile