RNA id: TCONS_00021702


Basic Information

Item Value
RNA id TCONS_00021702
length 940
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id XLOC_009820
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17665762 ~ 17666931 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTGTGGGTGTTTCAATGGGGCAGCGGAGAGTGCTCCAAAAAAGTGAGTGTTTAAAAAGTGAATACTGGACTGAGGGGCTTTGTTGTCACAAATGTCCTGAAGGGTATAAGCTAACAAAGAGATGCTATAGCGGAATGTCAACTCAATGTGCAAAATGTTCAGAAGGGACATACCAAGACAAAATGAACTATTTCCCAAACTGCTTCAGATGCCAGGAATGTACTAAGAGAAGTCATGCAGTGATGATTTCGCCGTGTACGTACCAAAGTAACACTGTTTGTGGATGTCAATCAGGATACCGCAAAAAAATGTTTGACAGTATTTCATGGGCTTGTGAGCCCTTTAAAAAGAGTGATTACGTATAACTTAAAACAAGAGGAGAGAAATATCATCCAGGCTTCGTGAGACGGAAGTAAACATGTCTATCTCCATCCATGGTTCGggccttaataaaaaaaaagtttgggcaccctctcTTTTTTGTGGATTTTGAAACCTGTAGTCACTTAACACTAATTGTttacaacacaaaattgatttAAGTGACTCGGTAAACAATAACAATCCTAACACAGGTGCAACAAATcatgaaaaattatatttaaaacagcTGATTGCTAGTTGTTTGAACCAGAATGTAGCAAAATAAGAACCTCAAAAGAACTTCCCAATGACCCAAAACTAGAATAATTCTTCAACATGAATGTTGAACAGAAGGATACAAAAAGGTATATACAAAAGTTTGAAGTCTCTATATCCATAATCGGAAATCTAGCAACaaaatggaaggccacaggaACAGTTCTTGTAAAGGGAAGATGTGGTAGgccaagaaaaatatataaaaaggcaAAGGTGAAGAATGGTTAGAATGATCACATACAAACCACAGACCACATTCAAAGTGCTCATCTTGCTGCTGATAATGTCATTGTACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021700 lncRNA upstream 63884 17600877 ~ 17601900 (+) True XLOC_009819
TCONS_00021911 lncRNA upstream 114725 17548791 ~ 17551059 (+) True XLOC_009817
TCONS_00021910 lncRNA upstream 363265 17300153 ~ 17302519 (+) True XLOC_009814
TCONS_00021909 lncRNA upstream 661409 17004014 ~ 17004375 (+) True XLOC_009811
TCONS_00019598 lncRNA upstream 730318 16933047 ~ 16935466 (+) True XLOC_009809
TCONS_00021912 lncRNA downstream 2369 17669300 ~ 17670457 (+) True XLOC_009821
TCONS_00021703 lncRNA downstream 835635 18502566 ~ 18512199 (+) True XLOC_009826
TCONS_00019622 lncRNA downstream 868725 18535656 ~ 18540899 (+) False XLOC_009827
TCONS_00021704 lncRNA downstream 883592 18550523 ~ 18551058 (+) True XLOC_009827
TCONS_00021913 lncRNA downstream 1375950 19042881 ~ 19124410 (+) False XLOC_009830
TCONS_00019607 mRNA upstream 198322 17389116 ~ 17467462 (+) False XLOC_009815
TCONS_00019608 mRNA upstream 230137 17389135 ~ 17435647 (+) True XLOC_009815
TCONS_00019606 mRNA upstream 412395 17252487 ~ 17253389 (+) True XLOC_009813
TCONS_00019605 mRNA upstream 564343 17089114 ~ 17101441 (+) True XLOC_009812
TCONS_00019604 mRNA upstream 673976 16978424 ~ 16991808 (+) True XLOC_009810
TCONS_00019611 mRNA downstream 47733 17714664 ~ 17719700 (+) False XLOC_009822
TCONS_00019612 mRNA downstream 48312 17715243 ~ 17719694 (+) False XLOC_009822
TCONS_00019613 mRNA downstream 48446 17715377 ~ 17719792 (+) True XLOC_009822
TCONS_00019614 mRNA downstream 96917 17763848 ~ 17798412 (+) False XLOC_009823
TCONS_00019615 mRNA downstream 96964 17763895 ~ 17797950 (+) True XLOC_009823
TCONS_00019610 other upstream 94850 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019609 other upstream 148702 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019587 other upstream 1511326 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019585 other upstream 1798619 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019535 other upstream 4224189 13424551 ~ 13441595 (+) False XLOC_009767
TCONS_00019630 other downstream 1398414 19065345 ~ 19128471 (+) False XLOC_009830
TCONS_00019642 other downstream 2037493 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019651 other downstream 2500903 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019655 other downstream 2629892 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019658 other downstream 2829842 20496773 ~ 20504865 (+) True XLOC_009846

Expression Profile

//