RNA id: CI01000304_03268621_03269674.mRNA


Basic Information

Item Value
RNA id CI01000304_03268621_03269674.mRNA
length 994
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000304_03268621_03269674
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 3268621 ~ 3270242 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATAAAATAATAATAACAATAATAATAATAATAATTAAAAAATATAAATAAATAAATAAATAAATCTATGCCACAAAAAAAAAGAAAAAAAAAAAAAGAAAGAAAGAAGTGACATGTTAATCAGGTATGCCGTAGCGTAGGCATAAATAAGCAGTGACGTTTGTTCTCAAGTGTAGTTAAAGTGTAGTTAAACTCTGTAAGCTTCACCTGTAAGTAACAGGAAGCTAAATTACATGCCGAAAAGCTGTCTACGTAGGCTACTGACAGTAGATCGGCAGCTTACGGTATAAGTAGATTACCCTTTATTTCCTCCTTTATACACACACACACACACACACACACACACACACTTGTGTGTACACAGAATGCTTTCCCTTGACTTAGGCTACTGTCTGTGTGGATTCACCCTCATTACTTCGGTGGGCGTCACACGAGCTCCACCCTGACTGGCGGGAAGGGCGAGTGAGGTATCAGAACGCGTCAGGCATTCTATGACTACATGGCAGATTCCTAAAAGCCTCTCCACATTCACTGGATCATTCTCTCAGAGATCACGCAGCCGAAGTCATGGATGCTTGCTTTCTTCTCCTTGTGTCTTTTCTCTCCGTGTTTCATTTCAGCAGTGCTGACCAGCCTTTGGAGGAAACAATAGTTGTAGCAAGAAATGTAGATCTGCTCGGTGGCTGGACCGACGCCAACCCAGAGAGGGAAGATGTTCAAGAAGCTGCTAAAGAAGCTGTAGAGTCATTCAACACGAAGTCCAAAGCAAAGAAATACTTCAAACTTATCAATATTATATCGGCTCGCACTCAGGTAACAAATATGATAAACTACAAAATAGAGGCCACTATTGGAAAGACAAAATGCCGCAAATCCAAAGATGCAAATATTGAAGGTGCAAATATTGAGGGTTGTGGCATGGCAAGGAAGCAACTGGCATGTAAGTTTGAAGTAACCCTTAACCCAAGGAATGATGACCATGAGGTGCAGAAG

Function

GO:

id name namespace
GO:0004869 cysteine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482240 lncRNA downstream 181996 3085419 ~ 3086625 (-) True G419842
TU482238 lncRNA downstream 189019 3079366 ~ 3079602 (-) True G419840
TU482180 lncRNA downstream 304818 2963590 ~ 2963803 (-) True G419783
TU482174 lncRNA downstream 326674 2941699 ~ 2941947 (-) True G419777
TU482148 lncRNA downstream 374132 2889285 ~ 2894489 (-) True G419756
TU482644 lncRNA upstream 117436 3387678 ~ 3389213 (-) True G420221
TU482569 lncRNA upstream 149680 3419922 ~ 3478109 (-) True G420150
TU484052 lncRNA upstream 489176 3759418 ~ 3759745 (-) True G421465
TU484058 lncRNA upstream 518477 3788719 ~ 3788926 (-) True G421471
TU484084 lncRNA upstream 732797 4003039 ~ 4003732 (-) True G421497
CI01000304_03214897_03241215.mRNA mRNA downstream 27406 3213483 ~ 3241215 (-) True CI01000304_03214897_03241215
CI01000304_03158811_03160301.mRNA mRNA downstream 108320 3158493 ~ 3160301 (-) True CI01000304_03158811_03160301
CI01000304_02900497_02900924.mRNA mRNA downstream 366519 2899799 ~ 2902102 (-) True CI01000304_02900497_02900924
CI01000304_02694838_02711363.mRNA mRNA downstream 557119 2694660 ~ 2711502 (-) True CI01000304_02694838_02711363
CI01000304_02595522_02611332.mRNA mRNA downstream 657289 2595522 ~ 2611332 (-) True CI01000304_02595522_02611332
CI01000304_03305219_03313206.mRNA mRNA upstream 34977 3305219 ~ 3313398 (-) True CI01000304_03305219_03313206
CI01000304_03398119_03398652.mRNA mRNA upstream 127797 3398039 ~ 3400370 (-) True CI01000304_03398119_03398652
CI01000304_03408538_03449725.mRNA mRNA upstream 138014 3408256 ~ 3449901 (-) True CI01000304_03408538_03449725
CI01000304_03483866_03493010.mRNA mRNA upstream 213598 3483840 ~ 3493010 (-) True CI01000304_03483866_03493010
CI01000304_03529068_03531228.mRNA mRNA upstream 258285 3528527 ~ 3531304 (-) True CI01000304_03529068_03531228
TU481702 other downstream 1002380 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 1003281 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 1003436 2262502 ~ 2265185 (-) False G419354
TU481699 other downstream 1003436 2263092 ~ 2265185 (-) False G419354
TU481693 other downstream 1032515 2229384 ~ 2236106 (-) False G419353
TU484322 other upstream 993503 4263745 ~ 4263808 (-) True G421708
TU484147 other upstream 1391574 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 1401130 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 3207209 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 3207209 6477451 ~ 6479033 (-) False G422250

Expression Profile