RNA id: CI01000304_03615644_03617791.mRNA



Basic Information


Item Value
RNA id CI01000304_03615644_03617791.mRNA
length 2159
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000304_03615644_03617791
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 3614933 ~ 3618408 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATAAATCAACCTGTTATCTGCTTCCAAATTGAATTACATTTGTTTTCACTTTTATGTGGTGAACAAATAACTTGGAAACCTTTTTTTTTCCAGACTGTTTTGGGGCACAGTGTTAAATCACTGCAGTTTCCCTTTTGCAGAGACCTCCAAGCTTGCAATGTAAAGATAATAAAATAGTTCCTCTTGAGATGTTGAAAGACTTTGGATTTTAAGAGGCTAGCAGGTTTGGCAAATGGATATGAATAATAAACTACAGCAGCTTTATGTTCGCACTGAGGAACAAGGATTCGTGGAATAAACAGTTGTGTGCATTATCAGAATATTTCAACAACGCACTAATTTAGCCTCAGGAACGAAGCAATGGGCGTCTAGAGGCATCTACGGGTGAAAGCGCATAATTCAAGGAAGTACTGTAAATATTTACGTACTATTTACTTCCTGTTTAACTCCACATGGAAAAAACAGTAAACTCTTGGTGAAATTTGCATACTTATTGGCCTCTGACACTCAAACTATAGAGCACCACCAATTGCTTAAAGGTCACAAATGAAAGTTCTGAGATGGAGTTCTGAGTTCTGGATGTGAATCTGGGCCCCATCACCAAAGAAGAAATAAAGAAAGCTTCCCAGAAGATCAAGGGAAAGCACCAAGACCCAACAACATTTCCCTGGAAGCCCTGGAATCAGACCTTGGAACTACAGCAGACATCATGGTGGACTTGCTGAAAGAGGCATTGGAGAAGGAAGAAATACCAGTGAAATGGAATGCAGGCTATATAATCAAGCTTCCCAGGAAAGAAGACCTTAGTGAATGTCAGAACTGGAGAGGAATCCAGCTCCTGTTCCTCCCAAGTCCCGTGGATTCCGCACTTGTGCCACGGGATTGCAGACCTCTATTCCCAAGCAAGGTTTTCACCAGAGTGATACTGGACATGATTAAGGTGTCAGTTGATGCCAAGCTGAGAGAAGAGCAAGCAGGATTCTGGGCCACAAGATCATGGTCACACACCGCGGAGGCGCTTGCTGCTGCATTCAGCTTGTTTCAAGCATTGGGAATCCCGAAGGAAAAAGTGCACGTTTTTCTAAGGGATAATGCAAAGAACATGGAAAAGGCCATGAAGGATGGCAATCTACCCAACCTGCCGTGCATGGCGCATTCACTCCAGCTCACTGAGGCCAAGGGAGTTATGTCTCAATGCAGCATCACTTATATAATTGTCTCTGGAAGACACATCGTCAGTCATTTCAAACAATCCCCTCTTGCCTACTCCCAACCTCAAAGTATTCAGAAACAGCTGGGCCAGCCTATCAAGAGACTACAGCAAGATGTACCTACCAGGTGGAACACAGGCAGTGGAAAAATGATTTTGCTACTCGCCCCATTTGAAGAGCTCACACAACAGATCAGCTCATCAACTGCATCAGCTGGAGATGTTATACCATCCATCAGAGCTTTAACTCATCTTCTTGAGAAGACCGCAGAGACTGACCATGGTGTAAAAACTTCAAAAGCCACGTTGTTGGAAGCGGTCCAGAAATGATTCTGTGACACTGAATCTGAGTACCTGTATAGCATCGCTTCAATCCTCGATCCGAGGTGAGAAAACTTAATTTACACATTCTTCAAATGTGTGTGTGTGTAGCTGTGTCACTGTTAGAGCGAATTAAAGAGCAGGAAAATGAGTATTGAAAACGTTTAAATTCAGAATCTATTAAATTGGAACATATATATTTTTTGACTATTCTAGAAGGCTCCTTAATTCATATTGCAAGACTATGTATCTTTGCTGTAAATGACTGATAAAAGAAGCAATTACTGAAATGAATAAGGTGTTATTGTGTTACTCTTTTGTGTAGGCTGGTATTTACTTCAAATTTGGTTAAATTTGCTTTAAAATTAAGCAGTTGGACGAATTAACAATAAGACTACAGAAAAAAAAAAAAAAAGCATATTATTTTGGAGTATGCTAGGCTGACTAATCAAAACAAGAGCCAAGCATAACCTTCAAAACTCATTAAATAATAGAAAGTTTCTTATTCTATATTTTCTTTTTTCTTTTTCTGTCCTGTTACATATTTCTTTTCTAAAATGGAGCAACTAACTCAATCACTAAAGTATTTCTGATTATGATTTTTGACAAATTCACATTAAATTCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU482346 lncRNA upstream 225492 3389177 ~ 3389441 (+) True G419940
TU482343 lncRNA upstream 233170 3381523 ~ 3381763 (+) True G419937
TU482278 lncRNA upstream 235533 3287401 ~ 3379400 (+) True G419875
TU482262 lncRNA upstream 308882 3169434 ~ 3306051 (+) True G419862
TU482206 lncRNA upstream 518995 3095705 ~ 3095938 (+) True G419808
TU482520 lncRNA downstream 74292 3692700 ~ 3695368 (+) True G420104
TU482725 lncRNA downstream 125433 3743841 ~ 3744102 (+) True G420295
TU482731 lncRNA downstream 141089 3759497 ~ 3759761 (+) True G420301
TU482750 lncRNA downstream 196885 3815293 ~ 3815758 (+) True G420319
TU482761 lncRNA downstream 215812 3834220 ~ 3834606 (+) True G420330
CI01000304_03376929_03378015.mRNA mRNA upstream 236750 3376871 ~ 3378183 (+) True CI01000304_03376929_03378015
CI01000304_03353284_03357099.mRNA mRNA upstream 257369 3351741 ~ 3357564 (+) True CI01000304_03353284_03357099
CI01000304_03278369_03283013.mRNA mRNA upstream 331750 3276308 ~ 3283183 (+) True CI01000304_03278369_03283013
CI01000304_03261474_03267659.mRNA mRNA upstream 346859 3261474 ~ 3268074 (+) True CI01000304_03261474_03267659
CI01000304_03193646_03207372.mRNA mRNA upstream 406551 3193388 ~ 3208382 (+) True CI01000304_03193646_03207372
CI01000304_03666156_03669795.mRNA mRNA downstream 47748 3666156 ~ 3670934 (+) True CI01000304_03666156_03669795
CI01000304_03975032_03978067.mRNA mRNA downstream 356624 3975032 ~ 3978545 (+) True CI01000304_03975032_03978067
CI01000304_03984177_03996203.mRNA mRNA downstream 365769 3984177 ~ 3996401 (+) True CI01000304_03984177_03996203
CI01000304_04170630_04190266.mRNA mRNA downstream 552222 4170630 ~ 4190266 (+) True CI01000304_04170630_04190266
CI01000304_04190428_04208535.mRNA mRNA downstream 572020 4190428 ~ 4208698 (+) True CI01000304_04190428_04208535
TU481280 other upstream 1521255 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 2739684 872670 ~ 875249 (+) True G418116
TU480224 other upstream 3050482 558092 ~ 564451 (+) True G418059
TU480131 other upstream 3387080 226703 ~ 227853 (+) True G417987
TU482914 other downstream 684928 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 1554815 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 2622825 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 3734241 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 3865733 7484141 ~ 7484688 (+) True G421435

Expression Profile