RNA id: CI01000304_04236578_04239825.mRNA



Basic Information


Item Value
RNA id CI01000304_04236578_04239825.mRNA
length 1482
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000304_04236578_04239825
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4236338 ~ 4240395 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTTATATAGGCTACAATACATCATTTTAACTGCCTCGAAAGCACATTTGCCCACCTGTTTATTTGTTCATCTGACATGGTATTATTAGAAGAGGTCACACTCGCAGTAAACCGGAGGCGTGCACGCCTGCGCGCTCACGACCTGTGCGTGTGAATTTCCTTCTTGTCACTCACATGTGTTACAGTGCGATAGAGAAACTGTTAAACAGTCGCAGCGTTAGAAGCGAAAGAGGAAGGAAAATGAAGATGTACTTTTCAACGGTGGTGATATTAGCAGCATCAGCAAATGTCACTGAGGGACTAACAACGAATCAGTCTTTCCCAACGGTCGTCAGTACAAATCAAAAACCAACTGATTTACCTACGTCTTCCTCGAGCACTACGAACGACTCTACATCAGCTCAGACAACGTCAAATACAACCTCTAGCGATAATACTACCTCTACAGCAACTGAGCTCACCAGCGTAGTCAATAATGCGACTAACGCGTCGACCACAATCACATCGAGTTTGGTGACTGAAACTCACACAACATCCTCTTCAGCGAGTCTTACCTCAGAGAAAACAACGCTGGGGAGCACGGCAGTGGTTGTTGCTAGTGCCAAAACTACATCTACGGCAACTATTACAACTAAACCGGTGTCCTCTTCTACTAGTGTAGTAATGACAACCGAAAAAACGAAAACCATCTCAACACAAGACAAAGATAGTGTTGAACAAGAAAAGAAGAACCCAGAGGCCCTGAGCTCAGTAAGTGTTGCTGCCATCGTAATTGGCTTCCTTGTCATTGTATTAATCTTACTTGGTGGGGCGTACTACTTCAAAATGCGACGTTCTTCTTACGGACGCCTTTTGGATGATACTGATCACAGCACTGTGGGGAATTTTCTCAACCCAATGTTTGATGGTTAAAAAGGGAAGTGTTCATGAAGAAACATTAATTTCTGAGGAACAACCTACACACATTTCTTTAGCAATGAATACGATGGCATCAGATTATGTATTTTGGCCTCAAAATTGCCACGTCAATCTTCATCTAAATCGCCTAAACATAGATCATACACTGAAGAGAATCATCAAGAAGTTTTTCAAATGTACACTCTTAAGAATAAAGGTTCCAAAAGGGGGTTCTCACTCTTCCATAGAAGAGCCAGTTTTGGTTCCTCAAAGAATCCTTCAAGAACCATTTTTAGAACCTTTTTTTTCCACTACAAAGAACCTTTTGTGAAATGGTAAGATTCCATAGATATTAAAGGTTCTACATGGAACCATCAATGCCAATAGGGAACCTTTACTTTTAAGAGTGGCGAGACTTTCTGAAAGTTTTACTATGAAGGCTGGAAGTGATGTCCTAGAAATGTAATTTTTGTTTGTTTGTGAAATGTATTTTCTTATTGTATTGGGTATATTTTCTGACTAACTAGTTTGCTCTGATTAAATGCACACACTGTTCGTCTCATGATCGTATTTTTTTCAGTGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU482935 lncRNA upstream 128780 4107238 ~ 4107558 (+) True G420466
TU482933 lncRNA upstream 130461 4105637 ~ 4105877 (+) True G420464
TU482925 lncRNA upstream 164381 4071703 ~ 4071957 (+) True G420456
TU482923 lncRNA upstream 172791 4063271 ~ 4063547 (+) True G420454
TU482766 lncRNA upstream 226342 4002893 ~ 4009996 (+) True G420333
TU482886 lncRNA downstream 23053 4263448 ~ 4265201 (+) True G420438
TU482978 lncRNA downstream 53170 4293565 ~ 4293939 (+) True G420504
TU482987 lncRNA downstream 68424 4308819 ~ 4309407 (+) True G420513
TU483134 lncRNA downstream 311671 4552066 ~ 4552528 (+) True G420642
TU483148 lncRNA downstream 379727 4620122 ~ 4620710 (+) True G420655
CI01000304_04223309_04223602.mRNA mRNA upstream 12569 4223309 ~ 4223769 (+) True CI01000304_04223309_04223602
CI01000304_04190428_04208535.mRNA mRNA upstream 27640 4190428 ~ 4208698 (+) True CI01000304_04190428_04208535
CI01000304_04170630_04190266.mRNA mRNA upstream 46072 4170630 ~ 4190266 (+) True CI01000304_04170630_04190266
CI01000304_03984177_03996203.mRNA mRNA upstream 239937 3984177 ~ 3996401 (+) True CI01000304_03984177_03996203
CI01000304_03975032_03978067.mRNA mRNA upstream 257793 3975032 ~ 3978545 (+) True CI01000304_03975032_03978067
CI01000304_04318151_04331824.mRNA mRNA downstream 77756 4318151 ~ 4331892 (+) True CI01000304_04318151_04331824
CI01000304_04346530_04362348.mRNA mRNA downstream 106135 4346530 ~ 4363156 (+) True CI01000304_04346530_04362348
CI01000304_04365876_04367947.mRNA mRNA downstream 125216 4365611 ~ 4368201 (+) True CI01000304_04365876_04367947
CI01000304_04381131_04396006.mRNA mRNA downstream 140736 4381131 ~ 4396075 (+) True CI01000304_04381131_04396006
CI01000304_04407815_04421342.mRNA mRNA downstream 166959 4407354 ~ 4421434 (+) True CI01000304_04407815_04421342
TU481280 other upstream 2142660 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 3361089 872670 ~ 875249 (+) True G418116
TU480224 other upstream 3671887 558092 ~ 564451 (+) True G418059
TU480131 other upstream 4008485 226703 ~ 227853 (+) True G417987
TU482914 other downstream 62941 4303336 ~ 4303832 (+) True G420445
TU483012 other downstream 932828 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 2000838 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 3112254 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 3243746 7484141 ~ 7484688 (+) True G421435

Expression Profile