RNA id: CI01000304_04253975_04256004.mRNA



Basic Information


Item Value
RNA id CI01000304_04253975_04256004.mRNA
length 3254
RNA type mRNA
GC content 0.40
exon number 3
gene id CI01000304_04253975_04256004
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4253411 ~ 4257602 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAAATTTATGCTTCCAAGTACAAACTGCCAAAAATATTGAGATGCATATTTTAGCACTCTAATAATATAATACATTTTACATGCAACATAATTTGGCAAATAAAATTGTGAATTTTATAAATACAGTACATTCATAAAATTAGAGCATTTAAACTACTCACAATTGTAAATTTGCCAGAGGACAGGATTTCTCTGCCTCGGCATTCATATCTTTAAATTTTTAAATTCTCAGTGGGATACATTTTATTCCCCCTTCTGTTCAGACAGGATGCATTTGTCTGTAAATTGTAAAAAAATAAATGTATATTTAATAAATTCATTGTAAAAAAAAAAATTAAATTTAACCGTTATTTCCCCAATTATTTTCTGTATTTTACCGGTCAATTTATATGAATTTCTACATCATTGAAATACCCCCACTTCCATCTCCCTTTTCCCTTTCTAATAGGTTGCAAACTATTTACATTGATACAATAACTTATTTTTGATTGTTCAGTATTGTAATGAACTGAAGGTTGAGGATCCAAACACAGTATTTATTAAGGGGTAATCCACAAATATAGTCCAAAAACAGGCAAATGGTCAAAAGCTCAGAGTAGGTAGTCTAAACAATGTTATCCAGAAAAACAAAAAAACTAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAACAAGAGACATGAGAATAGGAAACCATGGCTAGGAAAAGCAGAGCTAACACATACAAGACTGAGTGGGAAACCAGGCTTTAAATAGGGTGAGACTGATGAGGTAAGGAGACACAGCTGTTGGCAATCATTGATGAGTCCAGGCAATGGATTATGGGGAATATAGTTTGTGGGGGAGTGACAATAGTCGGGGTGGAGTGGCCCCTGGTGGTTCTCAAGGGCACTCCAGCTGATGATCATGACACAGCCCCCCTCCTAAGAAGCGGCTTCCAGACTGTAGACTGGTTTAAAGACCCCCACGGCGGAGCAGAAGACCACCACAGCAGGTCAGATGGGACTGAAGACCCCTACGGCAGAGAAGGGCTGTGGAGCAAACTCATTGGCTGGAGCGGGCTCTGGAATAGACTCTTGGGCTGGAGCGAACTCTTGAACTGAAGCGCAGTGCATAGCCCAAACACACCAGATGGCCATCGTTGTAACAGGGAGTGCAATTGTCAGTGCGACCACATCTGTGATCCCCAGACTTGGAATGCCTTAATGTCTTCATGTTAGGGATGGGTGATATCTTATCGTTTGTGATATACCATTGAAAATTCTCCTTACGATAAAAATTTGTCTCCTCGCGATAATAACAATAAGTCTAATTGATGGCGTAGTTTTGTGCACGACCGATTCACTGTTCACATGCGGAGTGAAAACAAGCATGGCGGAGGCCGGACGTGAGGCTGAGGAGGAGCTTGTTGTTAAGCGAGGAGCTACCTCCACAATTTGGAACTGGTTTGGTTATAGAAAATCAGATGCGGAGCAAACTATCTAATATGCAAGGTTTGCAGAAAAACGGTGGTTACAAAGAGTGGAAACACGTCCAATTTGTTCCACCATCTGAAACACAAACCAGAGTACAAAGAAAGTTTGAAGATACGCGAGACAATGGAGGCACCAACTACAAGTGGACCTAGGGGTAAGAAAATTCCCACCCAGACGAAAATTGCCAGCGCATTTGCTAATTGCGTCCCTTATGATAAGCAAAGTAAACGATGGAACGAATTGACGGAAGCAGGGGCGTTTTGTTTGTCAAAAGACATGTTGCCATTCCAAACTGTTGAAAAAGAAGGATTCAAGCGAATGATCCATAAACTGGACCCAAGATACAACATGCCTTCAAGGAAGTACTTTTCAAAAACAGCCCTGCCAGCGATGTATGAAGAGTGCCGTGAGAGAAGCATGAAGGATACCAGGATTGACAGAGCTGTGGGAGTCTGTAAGAAGATTGTCAGTGTTTTTTCGCACAGCTGGAAAAAGCAGCGAACACTCAAAGATGCTCAAGTAGAACTTGGCCTTCCACCACACAAACTTGTGACTGAATCAGCAACACGATGGGGATCAAAGCAGAAGATGATTCAGCGGATACTTGAGCAAGAGAAGGCCATTACTGAGCTGCTGCAGGGGAAAGATGAAGACACAGATCTCACCAAGACAATTAAAAGTTCAGTGGACTACATGAACACCAAATATGGTGACCTAGAGGTTCAGGAACTGATCAACATGGCAACAATTCTTGATCCACGCTTCCGCACTCAGTATATGAGTCAAGAAGAGATCTTGGTCATCAAAGCCAGAGTAGTCAGAGAGGTGGAATCCCTTTCTGTCTTGCCAAGTGATGCTGGCACTGCTACGCCAGCTGAATCAACAAAAGAAGCTCAGAGTGAATCTAAAAGGCAGAAAAAGAGTCTTGGAAGTTTTTTCAAGAAACCAGCTGCTGAGATGACCAGCCTTTCTGAAACAGAGAAAATTGAGGCTGAATTAAACAACTACCTGCATGGGCCACTTGCAGATGGTGAAAGCAATCCCCTTACGTGGTGGAAGGTATACAAGGTGAATTTCCCTAACATCAGTCGTTTGGTGAAAAAGTACACCCACAGAGAGGGTGTTCAGCGCTGCTGGGAATGTAGTGACATGCCAAAGGTCTTTTCTGAAACCAGCTACAGAGAATATGTTGGTCTTCTTGACCAAAAGTCTTAAAGTGTGAGCCCTGTTCTCTTTTTGAAAGCTACTGAATCACACTAGTATGTGTGTTATATAACTTTCACTACCAGACATGTTCATATCAGCCTCATTTCTACATTTTGCTTACAAATTAAGAGTATATCAGTGTTTACAGTTTAATTAAACTTTTATTTTAATTTAATTTATTGATTTGTTTTTTAATTTATCACCTTGTGTTTTGCACTATTTTGTAAACTATCTGAAGACAGTTAGGATCGTTACTTTTTGATACAGTGTTTGCACTATTTTTACAATTTGTTCCATGGGACAAGAGTGTTGAAAATTTAACTACCTAATTGGTGGTAGCATGTTCCACATACGTATTATATTTACATTCTAAGAGTGTGTTATTGACTGTTTCACACTCAACTTCTTTACTTTATCAGGTTACATGTTAACATGTTTGTTACTTCATCAGGATTTATTTGCAGTTGTACTCTGTTGTAATTTTGAAACACAACTGAAGACATGGTTGGTGATTGTTACTTTTGCTGTTTGCGCTATTTTTGCCACTGTTTGGACCATGAGACTATAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU484266 lncRNA downstream 15651 4236297 ~ 4237760 (-) True G421663
TU484255 lncRNA downstream 145854 4107263 ~ 4107557 (-) False G421655
TU484256 lncRNA downstream 145854 4107263 ~ 4107557 (-) True G421655
TU484084 lncRNA downstream 245132 4003039 ~ 4003732 (-) True G421497
TU484058 lncRNA downstream 464485 3788719 ~ 3788926 (-) True G421471
TU484337 lncRNA upstream 45554 4303156 ~ 4303880 (-) False G421719
TU484335 lncRNA upstream 45846 4303448 ~ 4303880 (-) False G421719
TU484339 lncRNA upstream 45846 4303448 ~ 4303809 (-) False G421719
TU484334 lncRNA upstream 45960 4303562 ~ 4303880 (-) False G421719
TU484343 lncRNA upstream 45960 4303562 ~ 4303809 (-) True G421719
CI01000304_04230808_04231542.mRNA mRNA downstream 21510 4229815 ~ 4231901 (-) True CI01000304_04230808_04231542
CI01000304_04227914_04228723.mRNA mRNA downstream 24268 4227120 ~ 4229143 (-) True CI01000304_04227914_04228723
CI01000304_04161154_04166640.mRNA mRNA downstream 86771 4160216 ~ 4166640 (-) True CI01000304_04161154_04166640
CI01000304_04144667_04151439.mRNA mRNA downstream 99878 4144460 ~ 4153533 (-) True CI01000304_04144667_04151439
CI01000304_04012800_04017022.mRNA mRNA downstream 236134 4012800 ~ 4017277 (-) True CI01000304_04012800_04017022
CI01000304_04263955_04264962.mRNA mRNA upstream 6244 4263846 ~ 4264962 (-) False CI01000304_04263955_04264962
CI01000304_04269487_04273391.mRNA mRNA upstream 11600 4269202 ~ 4273391 (-) True CI01000304_04269487_04273391
CI01000304_04370274_04377315.mRNA mRNA upstream 112672 4370274 ~ 4377481 (-) True CI01000304_04370274_04377315
CI01000304_04396799_04405867.mRNA mRNA upstream 139186 4396788 ~ 4405867 (-) True CI01000304_04396799_04405867
CI01000304_04429949_04448465.mRNA mRNA upstream 172015 4429617 ~ 4448468 (-) True CI01000304_04429949_04448465
TU481702 other downstream 1987170 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 1988071 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 1988226 2262502 ~ 2265185 (-) False G419354
TU481699 other downstream 1988226 2263092 ~ 2265185 (-) False G419354
TU481693 other downstream 2017305 2229384 ~ 2236106 (-) False G419353
TU484322 other upstream 6143 4263745 ~ 4263808 (-) True G421708
TU484147 other upstream 404214 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 413770 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 2219849 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 2219849 6477451 ~ 6479033 (-) False G422250

Expression Profile