RNA id: TU484322



Basic Information


Item Value
RNA id TU484322
length 64
RNA type TUCP
GC content 0.41
exon number 1
gene id G421708
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4263745 ~ 4263808 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGGTGACATGCAGATATAATCTTTATTAGTTAAATCATTCATTAGTATCATTCGTTTTCAAAGCACATTGTTATACTGTGCACTATAATCAGTTGTACATTGTTATTTGTACATTAATTTTGCATTAAAATATGATTAAACAGCAATATTGCAAGTTATTAGCAGATTAGCAGTCGTCGTTGTCACCCCTGCCATCACAGGTAGTGGTTGGTGGTTTTTTTGTGGTCCTAGCTACCGTAATGACTTCCTCAGAAGAATCAGATTCACTTGATTTAGACTCGTTTGATTCAGAATTTGAATCCTGTCTGGATGAATCATCTTCCTCTGAACTGGATCTTGACTGCACAGACTCTGATGAATCAGATCCTCTGCGCAAAGGAAACCGACGATTCAGAGAATCGCTTTCCTCTGAACTGGATCTTGACTGCACAGACTCTGATGAATCAGATCCTCTGCGCAAAGGAAACCGACGATTCAAAGAATCATCTTCCTCTGAACTGGATCTTGACTGCACAGAGTCTGATGAATCAGATCCTCTGCGCAAAGGAAACCGACGATTCAAAGAATCACTTTCCTCTGAACCGGATCTTGAATCACTTTCCCCTGAACTGGAACTTGGATCACTTTCCTCTGAACTGATTCTTGACTGCACAGAGTCTGATGAATCAGATCCTCTGCGCAAAGGAAACCGACGATTCAGAGAATCACTTTCCTCTGAACCGGATCTTGAATCACTTTCCTCTGAACTGATTCTTGACTGCACAGAGTCTGATGAATCAGATCCTCTGCGCAAAGGAAATGGTTTTGAAAAGACTGATGCAACAAAAAGCATCAGTATCATTGCCTGTGTTGACTTCATCCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU484266 lncRNA downstream 25985 4236297 ~ 4237760 (-) True G421663
TU484255 lncRNA downstream 156188 4107263 ~ 4107557 (-) False G421655
TU484256 lncRNA downstream 156188 4107263 ~ 4107557 (-) True G421655
TU484084 lncRNA downstream 255466 4003039 ~ 4003732 (-) True G421497
TU484058 lncRNA downstream 474819 3788719 ~ 3788926 (-) True G421471
TU484337 lncRNA upstream 37955 4303156 ~ 4303880 (-) False G421719
TU484335 lncRNA upstream 38247 4303448 ~ 4303880 (-) False G421719
TU484339 lncRNA upstream 38247 4303448 ~ 4303809 (-) False G421719
TU484334 lncRNA upstream 38361 4303562 ~ 4303880 (-) False G421719
TU484343 lncRNA upstream 38361 4303562 ~ 4303809 (-) True G421719
CI01000304_04253975_04256004.mRNA mRNA downstream 6143 4253411 ~ 4257602 (-) True CI01000304_04253975_04256004
CI01000304_04230808_04231542.mRNA mRNA downstream 31844 4229815 ~ 4231901 (-) True CI01000304_04230808_04231542
CI01000304_04227914_04228723.mRNA mRNA downstream 34602 4227120 ~ 4229143 (-) True CI01000304_04227914_04228723
CI01000304_04161154_04166640.mRNA mRNA downstream 97105 4160216 ~ 4166640 (-) True CI01000304_04161154_04166640
CI01000304_04144667_04151439.mRNA mRNA downstream 110212 4144460 ~ 4153533 (-) True CI01000304_04144667_04151439
CI01000304_04269487_04273391.mRNA mRNA upstream 4001 4269202 ~ 4273391 (-) True CI01000304_04269487_04273391
CI01000304_04370274_04377315.mRNA mRNA upstream 105073 4370274 ~ 4377481 (-) True CI01000304_04370274_04377315
CI01000304_04396799_04405867.mRNA mRNA upstream 131587 4396788 ~ 4405867 (-) True CI01000304_04396799_04405867
CI01000304_04429949_04448465.mRNA mRNA upstream 164416 4429617 ~ 4448468 (-) True CI01000304_04429949_04448465
CI01000304_04458463_04459040.mRNA mRNA upstream 192412 4457613 ~ 4459234 (-) True CI01000304_04458463_04459040
TU481702 other downstream 1997504 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 1998405 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 1998560 2262502 ~ 2265185 (-) False G419354
TU481699 other downstream 1998560 2263092 ~ 2265185 (-) False G419354
TU481692 other downstream 2027639 2229384 ~ 2236106 (-) False G419353
TU484147 other upstream 396615 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 406171 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 2212250 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 2212250 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 2212250 6477451 ~ 6479033 (-) False G422250

Expression Profile