RNA id: CI01000304_04458463_04459040.mRNA



Basic Information


Item Value
RNA id CI01000304_04458463_04459040.mRNA
length 1392
RNA type mRNA
GC content 0.34
exon number 2
gene id CI01000304_04458463_04459040
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4457613 ~ 4459234 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGCTAATTTATAGAATCAGTTCATCCCTAATGATCCTGCAATCTTTTGGTTAGAAGCCCAGATCTTTGACCACTACACTACACTGCACCAGACAAGAAGCAGTTGTTTTGATGTCGGGTCATTAGACATTAAATACACTGGCTACAGTAATATGCTACTCAAGGTCAGGTAAACATGGGTAATGTGATATGAAAATGACATGTCAATACTCCTGGATAATAAATGAAGAGAGTGATGGAATCATATTGTATGAATCATTTAAGGAAAGTAAAAACACAGGCCTCGAGCCTAGTTCCTCTTGGATTGTTACGTGTGCTGGTTTGTGGTCATGTGATGATGATGAACAGTGGGCGATGAAGAAGTGCGGGATTGCATCACAGCTTCAGGAATGCGGCTGCATCAATGAGATCCTTGTGGAAAAGTGTGGAGAATGTGACCTTTCTCCACCTCCTCCTCATCATCAGATGGACGCAGCCCAACTCTTCATCACATGTGCAAATGTGTTTGGACCGAGGGCATCCAAACAATTATTCCTTCAATGAAAAGTCACTGTTGTACACTACCAGTCAAACTCAAATTCAAATTCTGTTTCATTATATTTCATACATTTTTTTCGAAAGACTTCTGCTTCTGCGTTTTGTAGAAAAATACACATTTTTCTCAAATATTGATTTCTTTATATGTTACAAAAAAATGAAATGGACCAGGTATGGGTCAATGACAAATAAGTGTCCAAGCTGAAGCAAAGTAAAAATCTAGTTCTTGAATGCATTCTTGGTATTCATGTTGGCTTTGAAAAACTACTCTTTTAAAAAAAAGTTTAAACTTAATGATGTCACCAAATGTCATATGGTGTAACCATCAAGTAAAAAGTTACATATTTTCCTATATGTGTTACATGTGAACAAATCTCAATCATTGTTTTTAAGAAGGTAAACTGTTTTTAAGAGTTGACAAAAGTTGGCATGACATTTTACTGCCTGATCTAACCTTGCCTTGTTACAAAAAGGTCAAATTTTGTGATATATTTGAAAAGAATTCCTGACCTTAACACAGTCATGAGGGTCTGCAGGGTCGCCTGTCTATGATATCATTTCCTATTTATTTATTAATTATTCGCTGCACACTGGTTGCACAATGTGACTTTGATTTGTCAGTCAAAATTTTATTTAAATAAAAAAAAAAAAAAAAAAAAATAGCTTCAATTTCTTTTTTCCTCTAAGAAATTATAAAACTATAAACAAGATTACAGCAAACTACAAGGTTTTCTTGTCAATAATGTTTTTCTTCATTATGATAGCAGGATGGTTTATACAACCCAAAAATATGAAAATTAATTTGAATTAAAAATTAAAAACATGTTCACCATTTTTAAATGTATTTTTGAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU484388 lncRNA downstream 10939 4445389 ~ 4446674 (-) True G421757
TU484373 lncRNA downstream 92592 4364735 ~ 4365021 (-) True G421742
TU484372 lncRNA downstream 93012 4364278 ~ 4364601 (-) True G421741
TU484371 lncRNA downstream 93877 4363466 ~ 4363736 (-) True G421740
TU484359 lncRNA downstream 121671 4335724 ~ 4335942 (-) True G421728
TU484411 lncRNA upstream 162722 4621956 ~ 4623620 (-) True G421780
TU484414 lncRNA upstream 165466 4624700 ~ 4624922 (-) True G421782
TU484415 lncRNA upstream 166078 4625312 ~ 4625545 (-) True G421783
TU484417 lncRNA upstream 172955 4632189 ~ 4632647 (-) True G421785
TU484419 lncRNA upstream 174483 4633717 ~ 4633947 (-) True G421787
CI01000304_04429949_04448465.mRNA mRNA downstream 9145 4429617 ~ 4448468 (-) True CI01000304_04429949_04448465
CI01000304_04396799_04405867.mRNA mRNA downstream 51746 4396788 ~ 4405867 (-) True CI01000304_04396799_04405867
CI01000304_04370274_04377315.mRNA mRNA downstream 80132 4370274 ~ 4377481 (-) True CI01000304_04370274_04377315
CI01000304_04269487_04273391.mRNA mRNA downstream 184222 4269202 ~ 4273391 (-) True CI01000304_04269487_04273391
CI01000304_04263955_04264962.mRNA mRNA downstream 192651 4263846 ~ 4264962 (-) False CI01000304_04263955_04264962
CI01000304_04517750_04518058.mRNA mRNA upstream 58360 4517594 ~ 4518058 (-) True CI01000304_04517750_04518058
CI01000304_04522897_04527887.mRNA mRNA upstream 63615 4522849 ~ 4527887 (-) True CI01000304_04522897_04527887
CI01000304_04536971_04554186.mRNA mRNA upstream 77737 4536971 ~ 4554186 (-) True CI01000304_04536971_04554186
CI01000304_04579087_04595306.mRNA mRNA upstream 119204 4578438 ~ 4596340 (-) True CI01000304_04579087_04595306
CI01000304_04661808_04672936.mRNA mRNA upstream 202532 4661766 ~ 4672936 (-) False CI01000304_04661808_04672936
TU484322 other downstream 192412 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2191372 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 2192273 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 2192428 2262502 ~ 2265185 (-) False G419354
TU484147 other upstream 202582 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 212138 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 2018217 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 2018217 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 2018217 6477451 ~ 6479033 (-) False G422250

Expression Profile


CI01000304_04458463_04459040.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
End of interactive chart.

CI01000304_04458463_04459040.mRNA Expression in each Bioproject

Bar chart with 29 bars.
CI01000304_04458463_04459040.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.