RNA id: TU484137


Basic Information

Item Value
RNA id TU484137
length 464
RNA type TUCP
GC content 0.42
exon number 4
gene id CI01000304_04661808_04672936
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4661766 ~ 4672947 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAATTTGAAAATGGCGTCTGACGTGAGCCGTGATGGTTCTGAAAATAAACGCAAACTAGACGAAGATGAAGATGAAGGTGAAGGGGAATGGGTTGGGCCTCTGCCCAATGAGGCAACACAAACAAAAAAGAAAAAAGTTCTTGAGTATGAAAGATTGTACCTGGACAATTTACCCTCTGCCTCCATGTATGAAAGAAGTTACATGCATAGAGATGTTATAACACACATTGTTTGCTCCAAAACAGATTTTATCATAACAGCAAGTCAAGATGGGCATGTGAAATTCTGGAAGAAGAAGGAAGATGAGGGCATAGAGTTTGTCAAGCACTTCCGCAGCCATTTGGGTGTGATCGAGTGTATTTCTGTGAGTGCGGAGGGTGCGCTTTTCTGCTCTGTGGGTGATGATCAGGCGATGAAAGTTTTTGATGTCGTCAACTTTGACATGATCAACATGCTCAAACTC

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process

KEGG:

id description
K12736 PPWD1; peptidylprolyl isomerase domain and WD repeat-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484200 lncRNA downstream 1306 4669654 ~ 4670066 (-) True G421601
TU484428 lncRNA downstream 21707 4649365 ~ 4649665 (-) True G421795
TU484427 lncRNA downstream 22407 4648552 ~ 4648965 (-) True G421794
TU484419 lncRNA downstream 37425 4633717 ~ 4633947 (-) True G421787
TU484417 lncRNA downstream 38725 4632189 ~ 4632647 (-) True G421785
TU484496 lncRNA upstream 107234 4780181 ~ 4780495 (-) True G421860
TU484511 lncRNA upstream 212627 4885574 ~ 4885773 (-) True G421875
TU484524 lncRNA upstream 235483 4908430 ~ 4908939 (-) True G421884
TU484530 lncRNA upstream 270844 4943791 ~ 4944002 (-) True G421890
TU484531 lncRNA upstream 271184 4944131 ~ 4944346 (-) True G421891
CI01000304_04579087_04595306.mRNA mRNA downstream 75032 4578438 ~ 4596340 (-) True CI01000304_04579087_04595306
CI01000304_04536971_04554186.mRNA mRNA downstream 117186 4536971 ~ 4554186 (-) True CI01000304_04536971_04554186
CI01000304_04522897_04527887.mRNA mRNA downstream 143485 4522849 ~ 4527887 (-) True CI01000304_04522897_04527887
CI01000304_04517750_04518058.mRNA mRNA downstream 153314 4517594 ~ 4518058 (-) True CI01000304_04517750_04518058
CI01000304_04458463_04459040.mRNA mRNA downstream 212138 4457613 ~ 4459234 (-) True CI01000304_04458463_04459040
CI01000304_04789939_04792844.mRNA mRNA upstream 116492 4789439 ~ 4792844 (-) True CI01000304_04789939_04792844
CI01000304_04809176_04857217.mRNA mRNA upstream 136229 4809176 ~ 4857217 (-) True CI01000304_04809176_04857217
CI01000304_04894865_04896532.mRNA mRNA upstream 221918 4894865 ~ 4896705 (-) True CI01000304_04894865_04896532
CI01000304_04914520_04932141.mRNA mRNA upstream 241573 4914520 ~ 4932141 (-) True CI01000304_04914520_04932141
CI01000304_04935603_04968053.mRNA mRNA upstream 262555 4935502 ~ 4968302 (-) True CI01000304_04935603_04968053
TU484147 other downstream 5160 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484322 other downstream 406171 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2405131 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 2406032 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 2406187 2262502 ~ 2265185 (-) False G419354
TU484955 other upstream 1804504 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 1804504 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 1804504 6477451 ~ 6479033 (-) False G422250
TU484958 other upstream 1804504 6477451 ~ 6479033 (-) True G422250
TU485082 other upstream 1958139 6631086 ~ 6631499 (-) True G422354

Expression Profile