RNA id: CI01000304_04866074_04866590.mRNA



Basic Information


Item Value
RNA id CI01000304_04866074_04866590.mRNA
length 1889
RNA type mRNA
GC content 0.32
exon number 3
gene id CI01000304_04866074_04866590
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4864986 ~ 4867070 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCATATATAACAGGCTTATTGTACATGTTTCAGTGCATAGAGGAATATCCTGACTCAACTGCAAAGAAAAATCAGGTAAAGCTACTATTAAATTACCTATGTTTTGGTAAACTTTTTATATAAGTAAATACTACATCCAAATGTTGTGTTAGTTAAAAAACAACAATTTCTATGTCTGATTTTAACCTCCTTGGACCCAGGAATAGACTTTTGTCCTCTGTAGTGGACATTATATTTTACATCATACATGTCACAGTTTTACGTTCTGACATTAATTTAGTGATCAAATTTAGCACTCTTATGGAAATATGATAATATTTTGTAATTATCATTTAAATCAGATTAATTTTTAAATTGTTTGTTATAAATCAACATCTCAGGAAAATGCTATGGGGTTTCTAATCAAAATATGACTTTCTGTTACAAAACAAGGCATTGATTTCATACATGTAAACTGTAGAGGACATCAGGACTTAAATCATGATTATCAGGCATTTTGGGAGACACAACAAGTGAATAGCGAAATAAATTATATATTCCTATTAATTATTAGATATTATTATGAAAATGTTGCCAATTTTTACTCCCATTATTACATTTTTTTCATTACATGTTACTCCAAGAACACATTAATACAGTGTATAGATGCATTGTATTGAATGGGAAAACCCATGTATGGCCATTTTACCCACATATTGCATAAAGTAAAATGGTATATCGATTCATTCCGTTACACAATATTTAGTTAAAAAAAAAAATCCTGAAACCAAAAAATTGATTGGTGAATAAAAAAAAAATAAAAAAATCCATTGTTTTTGCCTAAACATCTAATTTCATGTCATTTTATTTTTTTTAAACAACTTAGTCCTGGTTTCCACTACAGAGGACATAGCATAAAATATAATTTTTCAAAAATTTTATTTTTCCATTTTTTTTCTTATGCTCTAAACAATGTAATGATGTGAAAAAAAACATTCCAAAACTATTTTTTTCTGAGTCCCAGGAGGATAGATTTGAAAAATGCTTCTTCTTCTTCTTTTTTTTTTCTTCTTTTTTTATGCCCTAAATTTCTTTATCTGTTCTAGATCATGGAGATCACATCTCAACCTGCTGCATTTGAACCCCAAGAGTTTCAAACAGGCTTAATGGGCTGCTGTGAAGACGTGGGCGTATGTTGTTGTGGCCTCTTCTGCCTCCCTTGTTTGGGCTGTTCCATTGCTTCCGACATGAATGAGTGCTGCTTATGCGGTTTAGGCATGCCGATCCGAAGTGTTTACCGAACTAAACACAACATACAAGGTTCCATGTGTAAAGACTGGTTAATCTCGAACTGCTGCTTTACTTGTGCAGCCTGTCAGCTGAAGAGAGACATCAACATAAGGAAGAGTAATGGAACACTGAAACCATGAGAACTTCAGTTCATGAGAGTTTCAGAGCACCGCTTTCTAGATGACTGTCTACACTACCAGCGAATCCTTGTGTATTGCTCTTGGAAACTAAAGATAAAGGAAAATTAAAAGAGTTAATTATTTAGTACATAATGAAAATGTCTTAAAAATAAAAGTTCCAAAAGGCAGTTTTCACAGCAATGCAGTATAAAATATAGTTTTGGTTCCACAAAGAAGCTTTTTACGTGAACAGTTTTTAACCCCTTAGCATTCAAAAAGAGACCTTAGGAATGCTAATGGGTTAAAAGAACATTTTTTTTTCTTTGTGTGAAGAACATTTTAATAATGTAAAGAACCTTTTTCCAGTGTAAAGAAAAATGTAAAGGTTCCACAGATACACAAAGAGTATGTCTTTGCTGCTTTGCTTAAGGAGCTGACTTAGTATTTAGTATGCTAATATGTATATGGCTTGTTAACAGCTTGTTATAATTCAGTGATGTA

Function


GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU483107 lncRNA upstream 1127 4863383 ~ 4863859 (+) True G420615
TU483187 lncRNA upstream 56929 4807858 ~ 4808057 (+) True G420694
TU483186 lncRNA upstream 57142 4807364 ~ 4807844 (+) True G420693
TU483185 lncRNA upstream 57767 4806806 ~ 4807219 (+) True G420692
TU483183 lncRNA upstream 62584 4802179 ~ 4802402 (+) True G420690
TU483221 lncRNA downstream 4157 4871227 ~ 4873291 (+) True G420728
TU483034 lncRNA downstream 49065 4916135 ~ 4916905 (+) True G420542
TU483035 lncRNA downstream 52301 4919371 ~ 4922423 (+) True G420543
TU483053 lncRNA downstream 57139 4924209 ~ 4924509 (+) True G420561
TU483228 lncRNA downstream 59218 4926288 ~ 4926510 (+) True G420735
CI01000304_04708075_04768393.mRNA mRNA upstream 96405 4707405 ~ 4768581 (+) True CI01000304_04708075_04768393
CI01000304_04687431_04705845.mRNA mRNA upstream 159044 4687431 ~ 4705942 (+) True CI01000304_04687431_04705845
CI01000304_04679406_04680031.mRNA mRNA upstream 184949 4679300 ~ 4680037 (+) True CI01000304_04679406_04680031
CI01000304_04650911_04659754.mRNA mRNA upstream 204530 4650911 ~ 4660456 (+) True CI01000304_04650911_04659754
CI01000304_04563922_04573450.mRNA mRNA upstream 291536 4563709 ~ 4573450 (+) True CI01000304_04563922_04573450
CI01000304_04876496_04883240.mRNA mRNA downstream 9266 4876336 ~ 4883702 (+) True CI01000304_04876496_04883240
CI01000304_04902333_04911640.mRNA mRNA downstream 33145 4900215 ~ 4911778 (+) True CI01000304_04902333_04911640
CI01000304_04989817_04997932.mRNA mRNA downstream 121292 4988362 ~ 4997932 (+) True CI01000304_04989817_04997932
CI01000304_05085761_05095609.mRNA mRNA downstream 218526 5085596 ~ 5096251 (+) True CI01000304_05085761_05095609
CI01000304_05122605_05137890.mRNA mRNA downstream 255535 5122605 ~ 5138169 (+) True CI01000304_05122605_05137890
TU482914 other upstream 561154 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 2771308 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 3989737 872670 ~ 875249 (+) True G418116
TU480224 other upstream 4300535 558092 ~ 564451 (+) True G418059
TU480131 other upstream 4637133 226703 ~ 227853 (+) True G417987
TU483012 other downstream 306153 5173223 ~ 5173339 (+) True G420524
TU483706 other downstream 1374163 6241233 ~ 6242997 (+) True G421162
TU483945 other downstream 2485579 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 2617071 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 3111558 7978628 ~ 7978814 (+) True G422786

Expression Profile