RNA id: CI01000304_05139300_05146419.mRNA


Basic Information

Item Value
RNA id CI01000304_05139300_05146419.mRNA
length 828
RNA type mRNA
GC content 0.45
exon number 3
gene id CI01000304_05139300_05146419
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5139123 ~ 5146728 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTGTCTTTCTCTCGGCAGTAGCAGGAAGCAGCTTGGCTCTGACACAATGGCTCACATCAAACAGCAAGGCTCTGCATTGCATTACCGACACACACATACACACCAATGCCAGTCAGGCCAATCAAAACACAGAGTGTAGAAAGCACAAACAGATCTAGGCAAACAGGACATTCCAGCTGCCGGGTGCTACAGATTCCTCACCGCAGCTAATCGCAGACCCAGAGAGTGAGAGCAACCAGGGGTGCCAACAGGAAATACGCTCCTATTATACATCTCGAATACAAGCACACACACACACACAGGACTTGATGTCGTATACCCTGACCCTGTCCGCACAGATCGACCCCTTGCACCGGACACAGACAGACGTGCAAGTTTGCAGCTCTTTCCAGGGTGTGAAAGTGGGAAGAGACCTTAAAAATGCCACTGTTCGGTTTTCTAGCACAATTTGTTGGAACAATTTGTTCAGCAAACATGCAGAGGTGGATGAAACCTCAGGCAACAAATGGTGGAATGCCACAGATCCGGATGGGAGCCGGCGGCCACCCGATCAGGAAAGGTGTGAACTTGGTGTGGTAGAAACTCTTTTGACTGTTATGAGGTGTGTGGCAAATGATACATGCAGAATTGCGCAGTCACTGAGTTTTTAGGATTTTGCATCAACAGCTTAATGGTTATGACATAAACAATAATAGGCTCTACTAAGTATTATTAAAAGAATAGTTCACTGAGAATTAAAATTCTGTCATCATTTACTCATCCTCATGTTTTTCCAAACCCATATGACCATTTCTTCATGCTGCTCTTTTCTTTACAATAGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484138 lncRNA downstream 100433 5037224 ~ 5038690 (-) True G421545
TU484553 lncRNA downstream 108177 5030214 ~ 5030946 (-) True G421907
TU484552 lncRNA downstream 109429 5029410 ~ 5029694 (-) True G421906
TU484551 lncRNA downstream 109760 5029037 ~ 5029363 (-) True G421905
TU484531 lncRNA downstream 194777 4944131 ~ 4944346 (-) True G421891
TU484599 lncRNA upstream 30857 5177585 ~ 5177800 (-) True G421952
TU484608 lncRNA upstream 82508 5229236 ~ 5229474 (-) True G421961
TU484609 lncRNA upstream 82752 5229480 ~ 5229805 (-) True G421962
TU484630 lncRNA upstream 101619 5248347 ~ 5297279 (-) True G421973
TU484655 lncRNA upstream 230836 5377564 ~ 5377787 (-) True G421993
CI01000304_05098315_05108511.mRNA mRNA downstream 30612 5097637 ~ 5108511 (-) True CI01000304_05098315_05108511
CI01000304_05039292_05067803.mRNA mRNA downstream 71309 5038986 ~ 5067814 (-) True CI01000304_05039292_05067803
CI01000304_04935603_04968053.mRNA mRNA downstream 170821 4935502 ~ 4968302 (-) True CI01000304_04935603_04968053
CI01000304_04914520_04932141.mRNA mRNA downstream 206982 4914520 ~ 4932141 (-) True CI01000304_04914520_04932141
CI01000304_04894865_04896532.mRNA mRNA downstream 242418 4894865 ~ 4896705 (-) True CI01000304_04894865_04896532
CI01000304_05194636_05197677.mRNA mRNA upstream 47900 5194628 ~ 5197867 (-) True CI01000304_05194636_05197677
CI01000304_05199154_05201984.mRNA mRNA upstream 52247 5198975 ~ 5203006 (-) True CI01000304_05199154_05201984
CI01000304_05206827_05224699.mRNA mRNA upstream 59849 5206577 ~ 5224699 (-) True CI01000304_05206827_05224699
CI01000304_05231085_05231758.mRNA mRNA upstream 83810 5230538 ~ 5233753 (-) True CI01000304_05231085_05231758
CI01000304_05244209_05247428.mRNA mRNA upstream 97156 5243884 ~ 5247428 (-) True CI01000304_05244209_05247428
TU484137 other downstream 466176 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484147 other downstream 472911 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484322 other downstream 873922 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2872882 2263092 ~ 2266241 (-) True G419354
TU481699 other downstream 2873938 2263092 ~ 2265185 (-) False G419354
TU484955 other upstream 1330723 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 1330723 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 1330723 6477451 ~ 6479033 (-) False G422250
TU484958 other upstream 1330723 6477451 ~ 6479033 (-) True G422250
TU485082 other upstream 1484358 6631086 ~ 6631499 (-) True G422354

Expression Profile