RNA id: CI01000304_05231085_05231758.mRNA


Basic Information

Item Value
RNA id CI01000304_05231085_05231758.mRNA
length 2965
RNA type mRNA
GC content 0.35
exon number 3
gene id CI01000304_05231085_05231758
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5230538 ~ 5233753 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATGGGTCTCATATCATCTTGTTGAACTGAAAGACTTAAATAATTTCTTGTCTAAGTATGTCATGAATGACAACTGTAAATCTTACAGGCCCTCTAGACGTCATAAACACGTCCCTTTAGACAAGCACTAGCAACAGATCAGGTGTTTGATGTACTACTTTCACACAATTCTTTTTTGCTGTTTGTCCCTGTGCAGCAAAAACTCTGAAACACTGGCAGAGGTGATAAAGTTTAACAGCTTCACCGATAACTACATCTAAATGTCAGGGGAAATCTGGAGCACAAAGTAAATTTCCACCTTCTCATTCTTTCCTCTAAAACTGAAGTCTTCTCAAAGAACCGTGTAATACCTCATATCTCATGTATTGCAGCAATCCTTCGAGTAAAGCTGTTCTGAACTAAAAACACACCTTAGCAACCATATAGCTACACCTTACATGGTGTTTATGTGATTTTATTAATTATTATATTCCTTGTAGTTCTTTGTGTTAAGTTCACATCCTGTAGCTATTTCCTGCAGCTGTACTAAGATACTGTCCTTCCACATACAGTTTGTTAATCAAATTAAGGACATTGTGCAGTGATTGAGAAAGAGACGTTGGTGTCAGTCTCATGTGGGATGTGGAGATCATGTCCTCATCAGTATCCAAACACTGTTCAATGGACCCCACTTTTACTTCTGCATACTTAAATAGTGGTGTATTCTTTACAAGACAGTCTACAGTTTGTATTTCAAGTCTTTGAAATATATTACTTTGATATTACTGATACTAATTCAGATTTCATTATTCATTGTTTTTGGATAAAATTCAGGTTATGAGTGTAAATGTATGTGAAGTGTGTTCAAATAAATGTTTGGTGCATTGATGAGAAAATTTTTAACAATTTCTGGTGACTGTCACTCACTTAACATCCCACAATCAATTGCCATTACTCACTGGTGAGACTACTATACATTTTTGTCTCTTGTAAGCAGTGTTTTACTATCTATGTTCTTTATAAACACTGTGTTGTGGTTTAATTTCTAAAACGTTGATGATCTAATAATCTCTTTCCAAATTAGATATTTTAAATACTAATAATAACCCCTAAAATTCCATCGTCCCCATTTAGTTGTTTTGCATAGATTGTGAAATGCTGCCATCTACCGACAAAATATGGAACTGCTTTGAATACACTACTCGTGTATCCTGTCTGTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAACATTACAAAGCCCATATATATTTATTTCCAAACTTCTCACATTCTCAGTATAATGATCCATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGGAATATCAGATTCACCAGGGGACATAATAATAATCATAATTATAACATAATAATAAAAAAAACATAATAATCTAATAGATATGCCTTACAAAAAACCCAATCATGTCATGTTATACTGTACATCAATTAGGCCTACCGTTCAAAATAACAAAGATGCCTCTGTTGAAGTTTATATAATTTAAAGAATCACAAAAAAACTTTTAGTCAGTGGAAGGATAGTTGGTACAACTGACATATATTTTACTTTATGCATGCGATTTTTCCAAAAACAGTAAGAATTTTGAATCGTGTATTGTCAACCTCCAATAAACCGCTATCACAATCAAACAAAACAAGTCCATTGTGTCAATTATTTGAATAATTTTGTGAAAACACTCAAAAACAATTAATGAAAATTGAGACTAAAATGATTAGGCTTAAATACAACTAAAAATAAGTGTACAAATATTTCTGACTCCTGCTTGCAAAACCAACATCTGTTTAAAGCAAGCTGTACCCAGAGCCGGTAAATATGTTTTTCAACGGCTCTGGCTGTACCAAAGAGTATTGGCTCTGTGCATAATATCTAATGGCGTGCACCGGAAGTGCATCAATAGACCAATCAAAGCGGCTCATACCAGAGCGAACCAATCAGAGCGATTACGAATGATGACGCTACAAGGCGCGAATTTATCCCACAAAAACAGCACGCGACTGTTTACAGTTCAAGAGCATGCTCAGAATTCGCGTGAATCATCAGCTGTTCGCATATTAAAACCATATAATCCACCTGTTAGGACACTTAACGTGGATTCTGAAGAAATGAATGCGACCGCGGAACTAGAAATGAAAACGAAATCCATTGTAGATGATACGCACGTCAAAGTTACGCCAAGACAAGGGGGCGTGTCTTTAAGAAGAAGACCTGCAGATTCCAGATGTAACGCTAGGAGCGTCAATTCAGGTTTTAAATCTCCTGTTCAGAAGTCTAGTATGGTGAAATCTCCCTTGTGCACTGAGGAAGAAGTCAAAGAGCTCAAGAAAACACTTGATCGGCTGGATACAGAGATCGCCTTGTTGGAAAAAGAGTAGGTAGTGAATGTGGGAAAGAGAGATACAAGAGATGTTGTGTGTTCATACTGAAGATACTATAGAATAATAGGTTTAGAATTCTTATTTACAGTTTATGGTGATTGGGAGATCCTAAATTCAGAAAAAAACATAATGTGAGAGATATTAAGTGGCTTCCATTAGAGTTGTTTTAGAAATCATGTGCATCTTTTTAAAAAGGGAAAACTCTTCAATAATTCCCTTCTTTTTTCTGTGGAACACAAAATATGATTTGAAGAATATCCTGGTGACTCGTTTCCATATAATGGAATTGAACTCAGGCTGTGACGCTCCAAAATAACGAAAGCAGCATCATTAACGCTATAACACCTACTGTATCATATTTTATTCACAAATTTATAAGGCCTTTAAATTATCAACATGATCAAAACTATTCCATTTAAAAAATGTAGATTTTTGATGATTATTTTGTATGTCAGGCTTTACAGGATTAAAATAACTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATCAGTTACTCACCAATTACTCATTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484609 lncRNA downstream 733 5229480 ~ 5229805 (-) True G421962
TU484608 lncRNA downstream 1064 5229236 ~ 5229474 (-) True G421961
TU484599 lncRNA downstream 52738 5177585 ~ 5177800 (-) True G421952
TU484138 lncRNA downstream 191848 5037224 ~ 5038690 (-) True G421545
TU484553 lncRNA downstream 199592 5030214 ~ 5030946 (-) True G421907
TU484630 lncRNA upstream 14594 5248347 ~ 5297279 (-) True G421973
TU484655 lncRNA upstream 143811 5377564 ~ 5377787 (-) True G421993
TU484674 lncRNA upstream 155734 5389487 ~ 5389707 (-) True CI01000304_05389793_05390092
TU484675 lncRNA upstream 158658 5392411 ~ 5392939 (-) True G422013
TU484676 lncRNA upstream 159231 5392984 ~ 5393480 (-) True G422014
CI01000304_05206827_05224699.mRNA mRNA downstream 5839 5206577 ~ 5224699 (-) True CI01000304_05206827_05224699
CI01000304_05199154_05201984.mRNA mRNA downstream 27532 5198975 ~ 5203006 (-) True CI01000304_05199154_05201984
CI01000304_05194636_05197677.mRNA mRNA downstream 32671 5194628 ~ 5197867 (-) True CI01000304_05194636_05197677
CI01000304_05139300_05146419.mRNA mRNA downstream 83810 5139123 ~ 5146728 (-) True CI01000304_05139300_05146419
CI01000304_05098315_05108511.mRNA mRNA downstream 122027 5097637 ~ 5108511 (-) True CI01000304_05098315_05108511
CI01000304_05244209_05247428.mRNA mRNA upstream 10131 5243884 ~ 5247428 (-) True CI01000304_05244209_05247428
CI01000304_05295266_05357773.mRNA mRNA upstream 61133 5294886 ~ 5357996 (-) True CI01000304_05295266_05357773
CI01000304_05363977_05376993.mRNA mRNA upstream 129073 5362826 ~ 5377522 (-) True CI01000304_05363977_05376993
CI01000304_05389793_05390092.mRNA mRNA upstream 155686 5389439 ~ 5390678 (-) False CI01000304_05389793_05390092
CI01000304_05410915_05460560.mRNA mRNA upstream 177162 5410915 ~ 5460560 (-) True CI01000304_05410915_05460560
TU484137 other downstream 557591 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484147 other downstream 564326 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484322 other downstream 965337 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2964297 2263092 ~ 2266241 (-) True G419354
TU481699 other downstream 2965353 2263092 ~ 2265185 (-) False G419354
TU484955 other upstream 1243698 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 1243698 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 1243698 6477451 ~ 6479033 (-) False G422250
TU484958 other upstream 1243698 6477451 ~ 6479033 (-) True G422250
TU485082 other upstream 1397333 6631086 ~ 6631499 (-) True G422354

Expression Profile