RNA id: TCONS_00021703


Basic Information

Item Value
RNA id TCONS_00021703
length 370
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_009826
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 18502566 ~ 18512199 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAACCAAGGTTACCAGAAAGTAATATGAcataatttagttaaaaaatataaagagaTAATAATAGGAAAAGTATTGACAACTAATGAAAGGGACTTAAATTGTagtgtaaaatataaattttcgaTTATTATGTGTCCTTAGTTGATGGTTAATGTAGCCAATCATTAGGCGTTTTCATTtttaagggGCCAATAAGGATACAGAATGCGGCACCACAGATTAGTTGTTTTCCGGATTTTACACGAGGTGTTTCAGTGAAGTGTAGCAGCGCGATCTCTCGCATGGATTTGTGAACTGAACGCGGTGATTAAGTGAAGTGCAGCGGCGCAGCGTGATCTCTCGCATGGATTTGTGATCGAGCACGGTGTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021912 lncRNA upstream 832109 17669300 ~ 17670457 (+) True XLOC_009821
TCONS_00021702 lncRNA upstream 835635 17665784 ~ 17666931 (+) True XLOC_009820
TCONS_00021701 lncRNA upstream 836105 17665762 ~ 17666461 (+) False XLOC_009820
TCONS_00021700 lncRNA upstream 900666 17600877 ~ 17601900 (+) True XLOC_009819
TCONS_00021911 lncRNA upstream 951507 17548791 ~ 17551059 (+) True XLOC_009817
TCONS_00019622 lncRNA downstream 23457 18535656 ~ 18540899 (+) False XLOC_009827
TCONS_00021704 lncRNA downstream 38324 18550523 ~ 18551058 (+) True XLOC_009827
TCONS_00021913 lncRNA downstream 530682 19042881 ~ 19124410 (+) False XLOC_009830
TCONS_00019631 lncRNA downstream 567575 19079774 ~ 19100325 (+) False XLOC_009830
TCONS_00021914 lncRNA downstream 619166 19131365 ~ 19151800 (+) True XLOC_009830
TCONS_00019619 mRNA upstream 349565 18150136 ~ 18153001 (+) True XLOC_009825
TCONS_00019618 mRNA upstream 351223 18142127 ~ 18151343 (+) False XLOC_009825
TCONS_00019617 mRNA upstream 414542 17913945 ~ 18088024 (+) True XLOC_009824
TCONS_00019616 mRNA upstream 516707 17913936 ~ 17985859 (+) False XLOC_009824
TCONS_00019614 mRNA upstream 704154 17763848 ~ 17798412 (+) False XLOC_009823
TCONS_00019620 mRNA downstream 22635 18534834 ~ 18572875 (+) False XLOC_009827
TCONS_00019621 mRNA downstream 23419 18535618 ~ 18568930 (+) False XLOC_009827
TCONS_00019623 mRNA downstream 461865 18974064 ~ 18998549 (+) True XLOC_009828
TCONS_00019624 mRNA downstream 500819 19013018 ~ 19013463 (+) False XLOC_009829
TCONS_00019625 mRNA downstream 501058 19013257 ~ 19018299 (+) False XLOC_009829
TCONS_00019610 other upstream 931632 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019609 other upstream 985484 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019587 other upstream 2348108 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019585 other upstream 2635401 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019535 other upstream 5060971 13424551 ~ 13441595 (+) False XLOC_009767
TCONS_00019630 other downstream 553146 19065345 ~ 19128471 (+) False XLOC_009830
TCONS_00019642 other downstream 1192225 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019651 other downstream 1655635 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019655 other downstream 1784624 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019658 other downstream 1984574 20496773 ~ 20504865 (+) True XLOC_009846