RNA id: TU484858


Basic Information

Item Value
RNA id TU484858
length 2195
lncRNA type sense_over
GC content 0.31
exon number 1
gene id CI01000304_06270879_06289706
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6267565 ~ 6290510 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTTTGAAGAATCTTTACATTGCACTTTTCCACAGAGACCCAAAAAAGCACCCAAAAATGCCATACAATTTGTTAATATGACATCATATGCTCAAATAGACTGTTTTTATGGTGTTTCCTTAGCTTTTAGGTCAGAAGAGCTGTGCAAATATTCTTCAGAGAATGAGAGAGTAAATAATAACAATGAAATCTTTTAAGTTCTTGTCATTAGCATCAATATAAGTGGAAGATTTTGCATCTGCCTGGCAGTAAATATTTTTCCGATTTGAATTCAGTTGTAATTCATGGTCTTGACCACTAAGGGACTCTATTGAGCTATTTTTTTTCAATCCCAAATTCAGTTGCAGTTCACCTTCTTGAGCACTAGAGCAGAATTGGGAGAGGTCAGTGTTACATCACATGACCAATGTTCTCTGACATCACTGAAAACATTAACTATATGAACTATTTAACTTAGTGCCAAAATTAACATATGTATATAAAACATAATTTTTCTGAATAGATTTTAATTCCATGCAAAAGTCTATCTGAATCAATCTATTGAATGAACTTTTGGGAGAAATAAAGGAGGTCTCTGCTGAGAGCAGGTTTGCACACACTGTCATGACAGATACTGTGTACATTCCGTGCGTATGTTCCAATTATCATCATCTTGTATTTCTGTTGTGGTCCAATGTTATCTTATGTGTAAGTTAGCTGTGTATGTACATAACTTTGACTGTCAAATTCTTGACCAAGAGATTGTTTTTGCACATTGCCATCTTGATTTACTAAAAATGAAGGGATGCTGTAGGGCACAATCCTCTGACTTTTTGTAGGGTGAAGAAAAATTATATTTTTTAAATATCTATGGATTTATTTTCTCTGATGTAAATAGAATATCCAAGACAATTCTAACACTATGAGACTTTTTATTTCTCTTCTTGCTATGGCTTCTTGTAATATATGTATATTCATGAGCATTTATGGCAAGATTTCCTTTGTATGCGCTCATTGGTCGAGGTGTAGAAATTATTGCTGCAAGTCTTTTTCTTTGGGAGGAAATGATAATTTTGTGAGTTATCAGTGCTGTCTAGTTCATATCAGATGTCATTTCATTTGACTGACATCATTTACCCTATATTTCACTATGAGGAACCACAAACAGATACTTCGTATGCATGCTTGATCTCTATTGATTGCTGAATTTTATGCGCTGATGATCCATGTCATATTTATTAAGCTTTTTTTTTTTTTTATAAATTAAGTTCAATCTTCTTGTGGGAAATCACATTCATTGAGGTTGAGAAGGTATTCTCATATAGATTTAGTCACAAAAACAATGCTGTAATAAAGCCATGTTACATTTTTAATGTGAGAAGCAAGCATATTCTTAATTTGGTAACACTTTATTTTACAGTGTCCTTGTTACATGTAGTTACTGTAGTAATAACTATAAATTATGCATAATTACATGCAACTAACCCTGAACCAAACCCTTACCCTATAGTAAGTACATGTAGTTAATTATTAATTACTCAGTAATTAAGTGCATATTTACACTGTAACAGACACTTTAAAATAAAGTGTAACTCTTAATTTAGTAACTGTACAATAAGGTTCCATTAGTTAACATTAAATGGTGCATTAACTAACAATGGGCAATACATTTGTTCAAGATTTATTAATCTTTGTTACCATTAAAATTAAGATTAATGGGTAACGCTTTATTTTAGTGTCCTTGTTACGCATGTTACATGTAGTGATAGCTATAAATTATACATAATTACATGCAACTAACCCTAAACAAAACCCTAATCCTAACCATAATTATATAGTGTGTTAATTGATATTACTTAATGTATAATTACAGTGTAAGACGGACACCTTAAAATAAAGTGTAACATAGTAATGCTTTAGAGGTATTTTTTCATTGTTATTTCATGTTAACCAATGTAGTTAACAATTGAAACCTTATTGTAAAGTGTTTTCCATATTTACTGGTTTTAATGATGCGATGGCTCAAAGATTTAAATTTAAGAGCCCTTGAAAAGAACCAGCTAGTTGCATTGCAGCACTGTTTGGGAGAATCCACATTTTACATTCATTAATACAGGCTCTGTCAAAACATGTCACTTTGATAAGAAATTTAGTTCTTTTAGATTTTATTTCCCTGCAATCTTTCTTATTCACACTCAAATTGTTACGTCCTATT

Function

GO:

id name namespace
GO:0031338 regulation of vesicle fusion biological_process

KEGG:

id description
K19944 TBC1D10; TBC1 domain family member 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484931 lncRNA downstream 3520 6263762 ~ 6264045 (-) True G422240
TU484922 lncRNA downstream 36098 6231222 ~ 6231467 (-) True G422232
TU484921 lncRNA downstream 36397 6230942 ~ 6231168 (-) True G422231
TU484919 lncRNA downstream 38668 6228540 ~ 6228897 (-) True G422229
TU484918 lncRNA downstream 39306 6227989 ~ 6228259 (-) True G422228
TU484951 lncRNA upstream 54700 6324459 ~ 6324994 (-) True G422246
TU484966 lncRNA upstream 177985 6447744 ~ 6448495 (-) True G422256
TU485038 lncRNA upstream 230960 6500719 ~ 6501031 (-) True G422318
TU485045 lncRNA upstream 241232 6510991 ~ 6519445 (-) True G422321
TU485058 lncRNA upstream 290028 6559787 ~ 6560009 (-) True G422331
CI01000304_06240590_06242902.mRNA mRNA downstream 24553 6240466 ~ 6243012 (-) True CI01000304_06240590_06242902
CI01000304_06234231_06236303.mRNA mRNA downstream 31156 6234205 ~ 6236409 (-) True CI01000304_06234231_06236303
CI01000304_06222605_06223109.mRNA mRNA downstream 43291 6221671 ~ 6224274 (-) False CI01000304_06222605_06223109
CI01000304_06204719_06212827.mRNA mRNA downstream 54389 6204106 ~ 6213176 (-) True CI01000304_06204719_06212827
CI01000304_06123328_06162242.mRNA mRNA downstream 105323 6120800 ~ 6162242 (-) True CI01000304_06123328_06162242
CI01000304_06300308_06314871.mRNA mRNA upstream 28946 6298705 ~ 6315061 (-) True CI01000304_06300308_06314871
CI01000304_06324113_06327228.mRNA mRNA upstream 54332 6324091 ~ 6328179 (-) True CI01000304_06324113_06327228
CI01000304_06395132_06433884.mRNA mRNA upstream 125276 6395035 ~ 6433884 (-) True CI01000304_06395132_06433884
CI01000304_06461313_06465520.mRNA mRNA upstream 190697 6460456 ~ 6465520 (-) True CI01000304_06461313_06465520
CI01000304_06473293_06476260.mRNA mRNA upstream 203534 6473293 ~ 6476366 (-) True CI01000304_06473293_06476260
TU484137 other downstream 1594618 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484147 other downstream 1601353 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484322 other downstream 2002364 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 4001324 2263092 ~ 2266241 (-) True G419354
TU481699 other downstream 4002380 2263092 ~ 2265185 (-) False G419354
TU484955 other upstream 207692 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 207692 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 207692 6477451 ~ 6479033 (-) False G422250
TU484958 other upstream 207692 6477451 ~ 6479033 (-) True G422250
TU485082 other upstream 361327 6631086 ~ 6631499 (-) True G422354

Expression Profile