RNA id: CI01000304_06461313_06465520.mRNA


Basic Information

Item Value
RNA id CI01000304_06461313_06465520.mRNA
length 1297
RNA type mRNA
GC content 0.39
exon number 5
gene id CI01000304_06461313_06465520
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6460456 ~ 6465520 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTGAATGACTGTACAAAGACATTCTGTTGTATAATTTATGTCACTCTCTCATACTTCAAGCTGTATGCCAAAACACAGCAAGCCAAGCAGACAGCAGAGGAAGCCGACAGGATATACAGTCAGAATGTGTCTGTGCTGGGGAAGATGAGAGAGGAGTGGCTGAAAGAGCATGTCAAAGCATGTGAGTTTTTTGAGAAACAGGAAGTGGAGAGGATCAACATGCTGAGGAATGTAGTGTGGACCCATCTCAACCATCTCTCCCAGCAGTGTGTCACCAGCGACGAGCTCTATGAGGAAGTGAGGAAGTCACTGGAGCAATGTAACATTCAAGAAGACATTGAGCATTTTATCAACCTCAGAAGAACCGGAGACAAACCACCAGATGATCCTTTATACTCAACTGTAGCAGAACCAGGGTACAGTCTAATACGATACTAACAAGAACGTAACTCGGTAAGAATTCTTGAAAGAATGTAACCTTGATGTACAATTTACAAACAGTAATATTAATGCTGGAGCAAGTATTATACAGTTACTGATGTTGTTTATGAATCCCTTGAATGTTTCCTTGAGGAAGTGGTGTTTTAGTTACTGTTATTTTCTTTTCTAGTTTTCGCAAACCCTTCTGCTGCTCAGTAGGAATACAGTGAAGGCATTTTTTCATCAAGGGCTGAAAAGCACATTGGTTATCTTCTAATGCTGGTGCCAGCTTCCTCATACTCTCTGGTGGGAATATATTTGTAGCCTGGCATGTAAGGGTGTTCTTATCTGTGTGTAAAAAGCATTTTTAACTTGCTAACCTAAAATCCACCCTAGCAAACAGAGTGAGCTTTGACACTATTGTGTAGTGATAAAAAGTTTAATCTTGAAGTTCTCACTACATTGATAACATCATCAAAACAACATTGTATAAATCTTTGTATTTGAATTACTGTAAAAAAAGATTGACTATTATAGATTAAGGAATTTAAAGGTGGAGTGTACAACATTGCACCACTAGTGGCACCAAATGGAATTGCATTTTGTTTGAGCAGCTTGACTGGTCTCAACCAATGGTGTGAGTTTGGGGGCGGGACTACCATTTTGGCCAGCCAATGGAAGACAGAAGGGGACTATTTTTTTTTGTCATTATTGTTACATTTTTGTTTGGTTCAGCTAGTGGTACACACTTCACCTTTAAAGCAGCTTTAAGGCCAGCTTTAAAAGGCCACAAAAAATATAATTTATTTCTAATGTAATATTCTAGACAGTGTCAATACACAGTCCTGCACCACTGGATACATTTCTTCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484966 lncRNA downstream 11961 6447744 ~ 6448495 (-) True G422256
TU484951 lncRNA downstream 135462 6324459 ~ 6324994 (-) True G422246
TU484858 lncRNA downstream 190697 6267565 ~ 6269759 (-) True CI01000304_06270879_06289706
TU484931 lncRNA downstream 196411 6263762 ~ 6264045 (-) True G422240
TU484922 lncRNA downstream 228989 6231222 ~ 6231467 (-) True G422232
TU485038 lncRNA upstream 35199 6500719 ~ 6501031 (-) True G422318
TU485045 lncRNA upstream 45471 6510991 ~ 6519445 (-) True G422321
TU485058 lncRNA upstream 94267 6559787 ~ 6560009 (-) True G422331
TU485059 lncRNA upstream 94966 6560486 ~ 6560717 (-) True G422332
TU485071 lncRNA upstream 146248 6611768 ~ 6612117 (-) True G422343
CI01000304_06395132_06433884.mRNA mRNA downstream 26572 6395035 ~ 6433884 (-) True CI01000304_06395132_06433884
CI01000304_06324113_06327228.mRNA mRNA downstream 132277 6324091 ~ 6328179 (-) True CI01000304_06324113_06327228
CI01000304_06300308_06314871.mRNA mRNA downstream 145395 6298705 ~ 6315061 (-) True CI01000304_06300308_06314871
CI01000304_06270879_06289706.mRNA mRNA downstream 169946 6269193 ~ 6290510 (-) False CI01000304_06270879_06289706
CI01000304_06240590_06242902.mRNA mRNA downstream 217444 6240466 ~ 6243012 (-) True CI01000304_06240590_06242902
CI01000304_06473293_06476260.mRNA mRNA upstream 7773 6473293 ~ 6476366 (-) True CI01000304_06473293_06476260
CI01000304_06480836_06483554.mRNA mRNA upstream 15223 6480743 ~ 6483986 (-) False CI01000304_06480836_06483554
CI01000304_06489010_06490993.mRNA mRNA upstream 22508 6488028 ~ 6492194 (-) True CI01000304_06489010_06490993
CI01000304_06507688_06509486.mRNA mRNA upstream 42022 6507542 ~ 6509622 (-) True CI01000304_06507688_06509486
CI01000304_06515961_06519125.mRNA mRNA upstream 50376 6515896 ~ 6519125 (-) True CI01000304_06515961_06519125
TU484137 other downstream 1787509 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484147 other downstream 1794244 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484322 other downstream 2195255 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 4194215 2263092 ~ 2266241 (-) True G419354
TU481699 other downstream 4195271 2263092 ~ 2265185 (-) False G419354
TU484955 other upstream 11931 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 11931 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 11931 6477451 ~ 6479033 (-) False G422250
TU484958 other upstream 11931 6477451 ~ 6479033 (-) True G422250
TU485082 other upstream 165566 6631086 ~ 6631499 (-) True G422354

Expression Profile