RNA id: TU484957



Basic Information


Item Value
RNA id TU484957
length 1547
RNA type TUCP
GC content 0.39
exon number 2
gene id G422250
representative False

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6477451 ~ 6479033 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCCTGTAAGCGCGCGCTCAGCAGCACTGGTTTCGAAGAAACGGACGATCGCGCGCATTGAATGTGCCTGTGTTTCAACTCAGTTTACTCTACATTTATCTTACAACATCAGAATGCCTAAGTCAAAGGAAGTGTTGTCTTCTTCCTCAGACAGTGACTCTGACAGTGAAGTTGATACGAAGGCCAAGAGAAAGAAGCAGACAACACCAGAAAAGCCATCAAAGAAACAAAAAAGTGGAGAAACTTCAAAAGTGTCATCTGCCTCCAAAAGCAGCAGCAGCAGCAGTAAAAATGATAATATGTTCCAGATAGGAAAGATGAGGTATGTGAGTGTCCGGGATTTCAAGGGGAAAGTGCTGATTGATATCCGGGAATACTGGATGGACCAGGAAGGTGAAATGAAACCAGGCAGGAAAGGTATTTCACTGAACCCAGAGCAGTGGAACCAACTGAAGGAGCAGATAAGTGAGATTGACGATGCCGTGAAGAGAATATAAGTCCTGCCTGCAGTTCACTGGCAATCTGGATGCTTTTTTAAACAGATTCTCACTCTACAGTTCTTCTTCTGCTGCCCTCCAAAGCCCAAACACAGTTTCTACACCTCTGAATCAGTAAATGGACAGGTCAAAGAGACCTGATTTCAGTCACACTTTATTTAACAGTGTCCTCCTTGTTACACGTTACATGTACTGTAGTAATATCAGTAAATTATGCATAATTACATGTAGGGCTGCCCCCAATAGTCGATTAACCATTAGTTGATTAGAAGAGGCTTGTTCGAGCAAAATTTTCTTAGTTGGTTAGTCGCAGAAAAAAAAAATCTCCACAGGAAGTGGTGAAGGGACAGATTGTTAATGGCAGGAAATCCAAACATTCGCATATCATTCATCAATCATCGACCTCAAATATGGCTTATCACTTGAAACATGCAAGTAGTAGCAGCGTTACAAGTCCTCTCACTCTGTTAGCCTAGTCCTAGATAAATGTACGCTATTATTAAAGTAGGTGCATATCCATGTGTTTCTGTGGAGAGCACGCTTATCGCATCACATGGAGTGCGATCACTTTTGCATTTTAAAATACTCTGTCATTGTAGTCATACAGATAAGAGTAATGAAAACTGTAAAGGGTCCACTTATTTCCAGCGTATACTTGCTACACAGACACGAGAAATGTATCTATAGAAAGCTTGAAATGTCTACTTTTAAACAAACCAATTCAAATGGAAAATAACTATTCTCAGATTATGTAATCTGTATGAAACATGCATATAGGTGTGTCCACTACTGTGGAGATGACAAGTTAGCATCGCCGTGCAGCCGGAAACACAGAAAACAATTAATTATTAACATGTTTAGACAGTCGCCTTCTGTTTTTTTCATGACACACTCATAATCATTACATTTGCCGGTGCACTGTGGAAAGCTTTGTGCTTGAGCGCTGATTAGGCTATGTTTTATATATATATATATAGGCAATTAAAAGCTGGTTATTATAATTCATGGCTTAAACGTGCGATTAGTCGACTAATTGCTTAAATGAACAACTACTAGGCGAATAGAAAAATCTTTAGTTGGGGGCAGCCCTAATTACATGCAACTAACCCTAAACCAAACCCTATTCCTAATCCTAACCCTAAAGTAAGTACAGATTGTTAATTAATATTACTTAGGATTTAAAAGTAGTACAATTACACTGTAACAAGGACACCTTAAAATAAAGTGTAACTAAATTGCGTAGTTACTACATTTTTGCCTTTTATAGAGCGGCATGCTTCACAAGGAAAATGTGGTGACCAGCACACTTTGTATGTATATTTTAGATTAGGTTTTATTGAAGTAGTTGTTCATTGTATTTTTCTTTTTTTATTTGAGAGTTTCATGGTTGGGGTTTTAAAGGGGTTTTGCTAGAGATATAGGGTGTGAGTTTGTGCCCTTCATTTTCAATAAAGATGGAAAATTCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU484966 lncRNA downstream 28956 6447744 ~ 6448495 (-) True G422256
TU484951 lncRNA downstream 152457 6324459 ~ 6324994 (-) True G422246
TU484858 lncRNA downstream 207692 6267565 ~ 6269759 (-) True CI01000304_06270879_06289706
TU484931 lncRNA downstream 213406 6263762 ~ 6264045 (-) True G422240
TU484922 lncRNA downstream 245984 6231222 ~ 6231467 (-) True G422232
TU485038 lncRNA upstream 17224 6500719 ~ 6501031 (-) True G422318
TU485045 lncRNA upstream 27496 6510991 ~ 6519445 (-) True G422321
TU485058 lncRNA upstream 76292 6559787 ~ 6560009 (-) True G422331
TU485059 lncRNA upstream 76991 6560486 ~ 6560717 (-) True G422332
TU485071 lncRNA upstream 128273 6611768 ~ 6612117 (-) True G422343
CI01000304_06473293_06476260.mRNA mRNA downstream 1085 6473293 ~ 6476366 (-) True CI01000304_06473293_06476260
CI01000304_06461313_06465520.mRNA mRNA downstream 11931 6460456 ~ 6465520 (-) True CI01000304_06461313_06465520
CI01000304_06395132_06433884.mRNA mRNA downstream 43567 6395035 ~ 6433884 (-) True CI01000304_06395132_06433884
CI01000304_06324113_06327228.mRNA mRNA downstream 149272 6324091 ~ 6328179 (-) True CI01000304_06324113_06327228
CI01000304_06300308_06314871.mRNA mRNA downstream 162390 6298705 ~ 6315061 (-) True CI01000304_06300308_06314871
CI01000304_06489010_06490993.mRNA mRNA upstream 4533 6488028 ~ 6492194 (-) True CI01000304_06489010_06490993
CI01000304_06507688_06509486.mRNA mRNA upstream 24047 6507542 ~ 6509622 (-) True CI01000304_06507688_06509486
CI01000304_06515961_06519125.mRNA mRNA upstream 32401 6515896 ~ 6519125 (-) True CI01000304_06515961_06519125
CI01000304_06659869_06667425.mRNA mRNA upstream 176329 6659824 ~ 6667499 (-) True CI01000304_06659869_06667425
CI01000304_06706476_06715064.mRNA mRNA upstream 222575 6706070 ~ 6715064 (-) True CI01000304_06706476_06715064
TU484137 other downstream 1804504 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484147 other downstream 1811239 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484322 other downstream 2212250 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 4211210 2263092 ~ 2266241 (-) True G419354
TU481699 other downstream 4212266 2263092 ~ 2265185 (-) False G419354
TU485082 other upstream 147591 6631086 ~ 6631499 (-) True G422354
TU485117 other upstream 261184 6744679 ~ 6783046 (-) True G422378
TU485601 other upstream 1146664 7630159 ~ 7652703 (-) True G422810
TU486232 other upstream 2378728 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 3084861 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706

Expression Profile