RNA id: CI01000304_06507688_06509486.mRNA



Basic Information


Item Value
RNA id CI01000304_06507688_06509486.mRNA
length 999
RNA type mRNA
GC content 0.43
exon number 5
gene id CI01000304_06507688_06509486
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6507542 ~ 6509622 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAACATTGCATGCAAGTTTCTGTATCTCAGAAGAGGAGAATCCACACTGAATCCACACTGTTCTTTTAATATTGATTGTTTTATCCTTACTCATATTGAACTCACTTATATAAATGATTTGGTTCTGAACAGAGCAATGAAGCTTTATCTTAGCATCCTGCTACTCTTCAGCTGCCAGTTCATTCACACTCTGGCTTTAAACTGTGAAATGATTTGTGGCACCCTGAAGCAGATAGACGCTGGGTCAGGATCAGTGGTTGGAGTGAACAATCAAAATGAGGTCTTCATCCTGATTAATAACGTCTTCACAAAGGTCTTTACGTCTCTAAAGCACTTCAGTGTTGGTCCTGCTGGTCAGTTCGGGGTGGATACAGCAAACAACATCTTCAAGGTGCGGGGTGGCAGCCTTGTGCAGATTGAAGGCCTTCTCAAACAGGTGGATGCTGGAGGAGATCAGAACACTGCAGGTGTCAACATGTATGATGACATATTCTGTTTAAATATGGATGCTAACAACAAATTGCCATCCAGCTCTGTTCCTTGGGTTCATATTGGTGGAAAGCTGAAGTATTACAGCTGTGGCCCGTACAGCTGTAATGCCTGTTCCGGGTCCAACTTTGTGAATATTCCTGGACTTCTGTCCATGATTGAAGTAGCAACTGACGGCAGTGTCTTTGGTGTCAACTCTCAAGGGGCCTTATTCCAAAGAACTGGCATCACTCAATCCAACCCCGCTGGCACAGACTGGATCTCGATGGTTGCCTGTCCCAATGGCCACAAGCACGTGAGCTTTGACCTGGGATTGCTGTGGGTCGTCTGTGTTGATGGCTCCATCCGTAAATGTACTTTATAGTCTGTCATGCATCACTGCAGCAACAGAGGAGCTCAATCATTAACAGAAACCTCAAAATAATCAGATATTATTAACAGAAAATTATAAAAGTTTGATTAATCTCAATCTTTCTTTTCTTCTCTTTTTCCTGCTGTTGAATCAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU485038 lncRNA downstream 6511 6500719 ~ 6501031 (-) True G422318
TU484966 lncRNA downstream 59047 6447744 ~ 6448495 (-) True G422256
TU484951 lncRNA downstream 182548 6324459 ~ 6324994 (-) True G422246
TU484858 lncRNA downstream 237783 6267565 ~ 6269759 (-) True CI01000304_06270879_06289706
TU484931 lncRNA downstream 243497 6263762 ~ 6264045 (-) True G422240
TU485045 lncRNA upstream 1369 6510991 ~ 6519445 (-) True G422321
TU485058 lncRNA upstream 50165 6559787 ~ 6560009 (-) True G422331
TU485059 lncRNA upstream 50864 6560486 ~ 6560717 (-) True G422332
TU485071 lncRNA upstream 102146 6611768 ~ 6612117 (-) True G422343
TU485081 lncRNA upstream 120956 6630578 ~ 6630875 (-) True G422353
CI01000304_06489010_06490993.mRNA mRNA downstream 15348 6488028 ~ 6492194 (-) True CI01000304_06489010_06490993
CI01000304_06480836_06483554.mRNA mRNA downstream 23556 6480743 ~ 6483986 (-) False CI01000304_06480836_06483554
CI01000304_06473293_06476260.mRNA mRNA downstream 31176 6473293 ~ 6476366 (-) True CI01000304_06473293_06476260
CI01000304_06461313_06465520.mRNA mRNA downstream 42022 6460456 ~ 6465520 (-) True CI01000304_06461313_06465520
CI01000304_06395132_06433884.mRNA mRNA downstream 73658 6395035 ~ 6433884 (-) True CI01000304_06395132_06433884
CI01000304_06515961_06519125.mRNA mRNA upstream 6274 6515896 ~ 6519125 (-) True CI01000304_06515961_06519125
CI01000304_06659869_06667425.mRNA mRNA upstream 150202 6659824 ~ 6667499 (-) True CI01000304_06659869_06667425
CI01000304_06706476_06715064.mRNA mRNA upstream 196448 6706070 ~ 6715064 (-) True CI01000304_06706476_06715064
CI01000304_06725873_06727044.mRNA mRNA upstream 216077 6725699 ~ 6727044 (-) True CI01000304_06725873_06727044
CI01000304_06738434_06742551.mRNA mRNA upstream 228632 6738254 ~ 6742551 (-) True CI01000304_06738434_06742551
TU484955 other downstream 24047 6477451 ~ 6479033 (-) False G422250
TU484956 other downstream 24047 6477451 ~ 6479033 (-) False G422250
TU484957 other downstream 24047 6477451 ~ 6479033 (-) False G422250
TU484958 other downstream 24047 6477451 ~ 6479033 (-) True G422250
TU484137 other downstream 1834595 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU485082 other upstream 121464 6631086 ~ 6631499 (-) True G422354
TU485117 other upstream 235057 6744679 ~ 6783046 (-) True G422378
TU485601 other upstream 1120537 7630159 ~ 7652703 (-) True G422810
TU486232 other upstream 2352601 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 3058734 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706

Expression Profile