RNA id: CI01000304_06986969_07013827.mRNA



Basic Information


Item Value
RNA id CI01000304_06986969_07013827.mRNA
length 3177
RNA type mRNA
GC content 0.39
exon number 9
gene id CI01000304_06986969_07013827
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6986828 ~ 7015834 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACATATAAGTGAAAGCGTGCACATGCACACACACACACGGTCACACACCTGCAGATGAACGTCTGAGCCAAGAATCTTTACCATTGTGTCAGAGAGGGACGCAGTGTGGTGCTCCTCTTGCCCTGCTTAAACAGCATCAAAATGGGGGCAGATTATGCTGGCTTCTCTTATCTCCGCAATGAGAATAGAAGAAATGTCACCGTTCATATTAACAATCCAGCGGACATCTCAGTGATTGTTGTATATTTTCTGGTGGTTCTAGCTGTGGGAATATGGGCAATGGTACGGACCAATCGAACCACAGTAGGAGGCTTTTTCCTGGCTGGCCGAAGTATGGTGTGGTGGCCGATTGGAGCCTCTGTCTTCGCAAGTAACATTGGAAGTGTGCATTTTGTGGGACTAGCAGGAAGTGGAGCAGCTGCTGGTATCGCCATCGGAGGCTTTGAGTGGAATGCTCTTGTTGTTGTGATTTTAATGGGATGGCTCTTCGTGCCCATCTACATAAAGGCTGGGGTCGTGACCATGCCGGAGTATTTGAAGAAACGCTTTGGTGGGCAGCGTATCCGTATCTACCTCTCCGTGCTGTCCCTGTTTCTCTACGTTTTCACCAAAATCTCCGTGATTGTGCAGCGCTGTCTGTCTGCCAAGAGCCTGTCTCATGTGAAAGCTGGCTGCATCCTGTGTGGTTATCTCAAACTTCTGCCCATGTTTATCATGGTTTTCCCTGGCATGATCAGCAGAGTGTTGTATACAGAAAATCAAAATCTTGCTGTTCATTTTTATCTATTGACACATAATGTTGATATTCCCTCACAGGGCGCTTTCTACGGGTTGTGTATTGGTCTGTTGCTGTACAGACTCTGCTGGAGTTTGAGGAACAGCACTGAGGAGAGGATAGATCTAGAGTTAGATGACTGGACTGATGAACAGGATTCCAGCTCTATGGAAAAAGAAGAGATGCGTGAGGAACCAGGCTTTTGTAAGAAGGCCTACAACTGGTTCTGTGGCTTTGATCAAGGCAATGACTCTAAACTGACTAAAGAACAGGAGGCGGAGATGAAGATGAAGCTCACCAACACCACTGAGAAACCTCTATGGAGAAACGTGGTCAACGCTAACGCTATTATCCTACTCGCTGTCTGCGTCTTTTTCCATGGTTTCTTTGGTTAAAGATCACACCAGTAGCATCTAACTCAGTTAATGATATTTGGGGGGGGGGAGATATTGTAAAAAAAAAAAAACCATCAAATTTTGGCAATGTTAAGAGGATTTGATATTTCCAATTAATGTAGTCCTGTTACATTATTCTAGTCTATTATTAGGTTACTTTAATAAATGAATATTATAATAAATTTGCCACAATAATTTGCAACACCGCATAACAGACATGCTGTGAAGATAATAAAATATTAGGATATTAGCTCTTCTTTGAAAATATCTTATTTTTATTTATTTTTTAGGTCTATTATACAATTAATTATATAATTAATTATATTACATGTAAATTAAAATTATTAACAGTCTATATTCCTAACAATGCAGTCATCAATGAAAATTAAGAGCAGATTTACTTAAAGCACCGACTTCACCGACAACCTGTTTAACACGAAATACTATTCTTCTCACTTGTTTCACTATATGTATGGGCCACAAGAGAAATAATGGAATAAATTAAGATCGACTTTCTGTAGTGAATACTGACTGAGGTTAAGACTCTTTCACCGGCATAACTCTTGCGCAAAGTTTGCACATTGCTTGTGTGATATCCATTGGCTCGCCGCCTTGGTTTAAAACGGAAAGATTTCCAAGGGGGCCCCGCGGATTTGCGCTACGCCACTGAGAAAGGCTTATAGTTCATCATAATAAAGTTATATACATCATACACACGCTATATTGCCAAATCTACCTGATTTTTTATATCAACAGAAAAATATACCAGGATATACTAGAGACTCTCCTGCTTCAGATCGTCATGGTTAATGATATGCTATAGCCCGCCGGTATTTTGACGTGATTGGTTACAGGGTAGTTTGTGATGTCAGAAACACCAGCAATTTCAAACCGCGGGTTTAGACTGTCTTTTTTTCACTACAGTTTTAAATAGAACATTCTCATGTAGCAAATTAGCTCAAAGAAATATGAATAATTAATCATAACTAGTTATAATTAATTATAAATATTTGGAATAAAATAAAATTAACTTAATGTAATAAAATTAATATTACAATCAATTAACCTGTTTGGCCAATGAACACTCAGTGTTAATTGTTTATTAATTCTAAGAAATGTTCATTTCCAGGTTATGGGAAATAACATTCTTATTGTACTGTACTACTCAGAGCATGTAGTCAGGATCTGCATGATTAGGGACTCCAGTATATGAGCATGAAACACAGACAACTTTACGTGTGACATGAACAAGACTTTATTAACTAGACTAAACACTTAAACTACTCTAACATTCACACACATACATGCATACAGTTTACCAAGGGAAAGAGAGAGATGAAGCAGAATACAGGAAAGCAAGAAGTTACAGCATCGTTTGAAACTCAGCAGATCAACAGCCTTGAGCAAACAATCAGTTTGGTTCTAACATGCCCTTCTTTAAAGGGGGTAAGGATACTTAATGTATCAAATAATGAGACTAAGTTTGATAGTTGCATGCAGGGCTCTGAACCGGTTCAAGGAACGAAAACGAAAACCGGAACTGAACAAAATTTTGACCGGAACGTAACCAGAAACGGAAACGAAATCAAATTTAATCTAATTTGAAATGGCCATTAACCGGTTAATAACGTTATTTTATCGTTCTGTTTAATATTTTGATTTGGCAGTCAACCAATCACGAAGTCAAATAGTACAGCCTATGCAAATGTGACGCTGACGCATCCAAAGTGTGTGAAATGCCCGCGCTCAGGCTCAGCTGTCAAGTCCGTTAGATAAGTCACAATGGCAATGCCCTGGCATTATTTTTTCCGATGATGTCACCAACCGTCAAGCATTAGGCCTACATTTAAGTGAAAATGAATGTCAAGTAATATGCAGCTTCTTGTGTGTTTTGAAACCAGCCAAAATTGCAGATGTAGAACACGAGTTCACACAACGTCACATCACGCACCTGCAGTGCTTCTGTGAATGGAGAAAACAGAATAAAACTATAGGCTACATAACAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU483868 lncRNA upstream 3012 6983549 ~ 6983816 (+) True G421300
TU483865 lncRNA upstream 14607 6972018 ~ 6972221 (+) True G421297
TU483857 lncRNA upstream 23685 6959488 ~ 6963143 (+) False G421292
TU483859 lncRNA upstream 23727 6962088 ~ 6963101 (+) True G421292
TU483818 lncRNA upstream 61793 6913997 ~ 6925035 (+) False G421260
TU483880 lncRNA downstream 64591 7080425 ~ 7097508 (+) True G421310
TU483928 lncRNA downstream 103976 7119810 ~ 7120041 (+) True G421358
TU483935 lncRNA downstream 110759 7126593 ~ 7126872 (+) True G421362
TU483938 lncRNA downstream 112659 7128493 ~ 7128732 (+) True G421365
TU483881 lncRNA downstream 159647 7175481 ~ 7177256 (+) True G421311
CI01000304_06875225_06878962.mRNA mRNA upstream 107520 6873700 ~ 6879308 (+) True CI01000304_06875225_06878962
CI01000304_06864719_06866382.mRNA mRNA upstream 120383 6864719 ~ 6866445 (+) True CI01000304_06864719_06866382
CI01000304_06844730_06857162.mRNA mRNA upstream 129595 6843662 ~ 6857233 (+) True CI01000304_06844730_06857162
CI01000304_06804498_06839363.mRNA mRNA upstream 147085 6803920 ~ 6839743 (+) True CI01000304_06804498_06839363
CI01000304_06772878_06775497.mRNA mRNA upstream 211064 6772878 ~ 6775764 (+) True CI01000304_06772878_06775497
CI01000304_07024195_07048285.mRNA mRNA downstream 8361 7024195 ~ 7048285 (+) True CI01000304_07024195_07048285
CI01000304_07154005_07160649.mRNA mRNA downstream 138171 7154005 ~ 7161125 (+) True CI01000304_07154005_07160649
CI01000304_07236677_07272874.mRNA mRNA downstream 220311 7236145 ~ 7272960 (+) True CI01000304_07236677_07272874
CI01000304_07288867_07299197.mRNA mRNA downstream 273033 7288867 ~ 7299754 (+) True CI01000304_07288867_07299197
CI01000304_07314354_07323703.mRNA mRNA downstream 297863 7313697 ~ 7324618 (+) True CI01000304_07314354_07323703
TU483706 other upstream 743831 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 1810037 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 2682996 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 4893150 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 6111579 872670 ~ 875249 (+) True G418116
TU483945 other downstream 336815 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 468307 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 962794 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 1216160 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 1655936 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203

Expression Profile