RNA id: CI01000304_07024195_07048285.mRNA



Basic Information


Item Value
RNA id CI01000304_07024195_07048285.mRNA
length 1638
RNA type mRNA
GC content 0.47
exon number 13
gene id CI01000304_07024195_07048285
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7024195 ~ 7048285 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCTGCTTCAAACACCATCAAAATGGGGGCAGATTATTTTGGATTCTCTTTTCTCCGCAATGAGAATAGAAGAAATGTCACCGTTCATATTAACAATCCAGCGGACATCTCTGTGATTGCTATATATTTTCTGGTGGTTCTGGCTGTGGGAATATGGGCAATGGTACGAACCAATCGAGCCACAGTAGGAGGCTTTTTCCTGGCTGGCCGAAGTATGGTGTGGTGGCCGATTGGAGCCTCTCTCTTTGCAAGTAACATTGGAAGTGGACATTTTGTGGGACTAGCAGGAAGTGGAGCAGCTGCTGGTGTCGCCATCGGAGGCTTTGAGTTGAATGCTCTTGTTGTTGTGATTTTAATGGGATGGCTCTTCGTGCCCATCTACATAAAGGCTGGGGTCGTTACCATGCCGGAGTATTTGAAGAAACGCTTTGGTGGGCAGCGTATCCGTATCTACCTCTCCGTGCTGTCCCTGTTTCTCTACGTTTTCACCAAAATCTCTGGGGATATGTTTGCAGGAGGCGTTTTCATCAACCAGGCTCTGGGACTGAACATTTACCTGGCCGTGATTATTCTGCTGCTGATTACAGCTTTTTATACAGTAACAGGTGGTCTAGCTGCAGTCATCTACACAGACACCCTGCAGACCGTCATCATGGTTGTGGGATCATTCATTCTCATGGGCTTTGCGTTCACTGAGGTCGGAGGCTATGAGAACTTCAAGGACCGCTATATGAATGCGATCCCGTCAGTGGTGGGTGTAAACATCAGTGAATCGTGCTACACCCCTCGTGCAGACTCATTCCACATGTTCAGAGACCCAATTACCGGCGATCTGCCCTGGCCTGGAATGATCTTTGGTCTTACTATCCAGGCTGGCTGGTATTTTTGCACTGACCAGGTGATTGTGCAGCGCTGTCTGTCTGCCAAGAGCATGTCTCATGTGAAAGGTGGCTGCATCCTGTGTGGTTATCTCAAACTTCTGCCCATGTTCATCATGATTTTCCCTGGTATGATCAGCAGAGTACTGTACACAGGTAAGAAGTGGAAATGGTATGTGGACTTTGAGATAAGAAATTCTGTCAATCCAAAAGTAATGTGCACCCATTCTTGTGACATTTTTGTATGCAATGTGCATCAGAAGGTCAGTGAACAGTTAAAGACTATTAGTGAAACTAATGTTTGTGTCTGCGTGAGCCCCAGTAACTGTCCCACGATCATCTGCGGTGTGCACTACCTGTATTTTGCAATCATCCTCTTCACCCTGTCCTGTGTATTGATACTGGTCATCTCCCTCATGACCAAACCCATTGACGACAAACATCTGTACAGACTCTGCTGGAGTTTGAGGAACAGCACTGAGGAGAGGATAGATCTGGAGTTAGATGACTGGACTGAAGAACAGGATTCCAGCTCTATGGAAAAAGAAGAGATGCGTGAGGAACCAGGCTTTTGTAAGAAGGCCTACAACTGGTTCTGTGGCTTTGATCAAGGCAATGCCCCAAAACTGACTAAAGAACAGGAGGCAGAGATGAAGCTGAAGCTCACTGACACCACTGAGAAACCTCTATGGAGAAACGTGGTCAACGCTAACGCTATTATCCTCCTTGCCGTCTGCATCTTTTTCCAGGGTTTCTTTGGT

Function


GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K14158 SLC5A1, SGLT1; solute carrier family 5 (sodium/glucose cotransporter), member 1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU483868 lncRNA upstream 40379 6983549 ~ 6983816 (+) True G421300
TU483865 lncRNA upstream 51974 6972018 ~ 6972221 (+) True G421297
TU483857 lncRNA upstream 61052 6959488 ~ 6963143 (+) False G421292
TU483859 lncRNA upstream 61094 6962088 ~ 6963101 (+) True G421292
TU483822 lncRNA upstream 99160 6922967 ~ 6925035 (+) True G421260
TU483880 lncRNA downstream 32140 7080425 ~ 7097508 (+) True G421310
TU483928 lncRNA downstream 71525 7119810 ~ 7120041 (+) True G421358
TU483935 lncRNA downstream 78308 7126593 ~ 7126872 (+) True G421362
TU483938 lncRNA downstream 80208 7128493 ~ 7128732 (+) True G421365
TU483881 lncRNA downstream 127196 7175481 ~ 7177256 (+) True G421311
CI01000304_06986969_07013827.mRNA mRNA upstream 8361 6986828 ~ 7015834 (+) True CI01000304_06986969_07013827
CI01000304_06875225_06878962.mRNA mRNA upstream 144887 6873700 ~ 6879308 (+) True CI01000304_06875225_06878962
CI01000304_06864719_06866382.mRNA mRNA upstream 157750 6864719 ~ 6866445 (+) True CI01000304_06864719_06866382
CI01000304_06844730_06857162.mRNA mRNA upstream 166962 6843662 ~ 6857233 (+) True CI01000304_06844730_06857162
CI01000304_06804498_06839363.mRNA mRNA upstream 184452 6803920 ~ 6839743 (+) True CI01000304_06804498_06839363
CI01000304_07154005_07160649.mRNA mRNA downstream 105720 7154005 ~ 7161125 (+) True CI01000304_07154005_07160649
CI01000304_07236677_07272874.mRNA mRNA downstream 187860 7236145 ~ 7272960 (+) True CI01000304_07236677_07272874
CI01000304_07288867_07299197.mRNA mRNA downstream 240582 7288867 ~ 7299754 (+) True CI01000304_07288867_07299197
CI01000304_07314354_07323703.mRNA mRNA downstream 265412 7313697 ~ 7324618 (+) True CI01000304_07314354_07323703
CI01000304_07334198_07342123.mRNA mRNA downstream 285777 7334062 ~ 7342298 (+) True CI01000304_07334198_07342123
TU483706 other upstream 781198 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 1847404 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 2720363 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 4930517 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 6148946 872670 ~ 875249 (+) True G418116
TU483945 other downstream 304364 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 435856 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 930343 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 1183709 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 1623485 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203

Expression Profile