RNA id: CI01000304_08232073_08235598.mRNA



Basic Information


Item Value
RNA id CI01000304_08232073_08235598.mRNA
length 1596
RNA type mRNA
GC content 0.39
exon number 5
gene id CI01000304_08232073_08235598
representative False

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8231293 ~ 8235655 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAAATGAAGATCAATTTTTTGACAAATAACATAGATATTAACATTTTTAAACATCAAAATTTCTTGTTAAAATATGAATGATGAAAAATGTGAAGTGTATTTTTAAGCTGTTGACTTTTTAAAATATTTTATGTAGTAGGCCTATCTAAATAAATATGCAGTCACAAACACCAGTTGTTTAATAATTTTACAATAATTATTAAAAGAATAATTTAAATTTACATGAAATTCAATATAGGGTCTGAGACTAGATTTAAAATCTGGGCTTCAAAATTTAATTTTAAATCTGGAAGTGTTTTAGACAATATGTCTTAGAAAGAAATATTTAACATTCTACAATTTTGTGACGATGAGCATGAGAGCTTTGTACAGGTGGTTGTTCTTGCTTCCACTGAAGTACAAAATGTTCTTCGGATCATTTTCAAATCATGTTGGAGAACGTTTAAAAAAGGTTCATGCAGCTTAAGTGTTGTTATCACTAAAGCAAAAGAGGAACATAAATATATCATTTTTCAGAATTTTTAGTTAAACTTTTTACTCGCATTGTTATTCTAATAATATATTCCGATTTCTAGAGAAATGTAAGGAAACATCCAATACTGTCGTGGGTTATCGTGTCAACCACTCATACACCTCTAGAGGGCGTCAGCGTCCACTGCGTCGATTTTGAAAAGGGGAGGGGGGGGAGAAACACATAGCACTATTGCGCATGTGCAGCAGTGTTATCACGCTTCGCTTCCAGACCAGTAGTGATTTTTGTGTAGTATATAGTCATCATGAAGGCTCTTAGGGGAATGGTGAGCGGAGCCGTGAGCGAAATATCATCTGCGGTTACCGGGAGCAAACACGTCGCCGTTCGGGAAAATGTCCTTGCCGTGACTCGTGACTACATTTCTCAGCCGAGATTGACATATAAAACCGTGGCTGGTGTTAATGGACCGCTTGTGATTTTGGATCAAGTGAAGCCAAAGGAAACATCAGCTAATTTGTTTGGAAAGTACTGTCTGGATTACATTGATGTTTTTGATGCAATGTTAACTAGTTACCTGGTGCAGTTTCCCAGGTATGCTGAGATTGTTCATCTGACTCTCCCTGATGGCACCAAGAGGAGTGGACAAGTGCTGGAGGTCACAGGCTCCAAAGCTGTGGTTCAGAAGTCTATTACAGGTCGTGTGTTCAACGGATCAGGAAAGCCGATTGATCGAGGGCCTGCAGTGCTGGCGGAGGACTACTTGGACATCATGGGTACATTTCAGTGTGGCTTTGTGATGCGCCACATAAGCTGTTATGCCATTATTGCTTTTTTTATAATCATGATATATGTACCATCCAATTCCCTCATGCTTCTTGCAGGTCAGCCGATTAATCCTCAGTGCCGTATTTATCCTGAGGAGATGATCCAGACCGGCATCTCTGCCATTGATGGCATGAACAGTATTGCCAGAGGTCAAAAAATTCCCATTTTCTCTGCGGCTGGTCTACCCCACAATGAGGTGTTTGAGGGAACATCTGGTATTGATGCCGAAAAAATGTGAGTGAATTTACACTGGACATTTTGAGTACACCAGTGTCCAAGGATATGCTGGGTAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU485811 lncRNA upstream 11110 8219614 ~ 8220183 (+) True G423011
TU485820 lncRNA upstream 69602 8160555 ~ 8161691 (+) True G423020
TU485860 lncRNA upstream 78057 8152857 ~ 8153236 (+) True G423046
TU485857 lncRNA upstream 80123 8150802 ~ 8151170 (+) True G423043
TU485855 lncRNA upstream 82853 8148071 ~ 8148440 (+) True G423041
TU485900 lncRNA downstream 39965 8275620 ~ 8279848 (+) True G423085
TU485908 lncRNA downstream 57232 8292887 ~ 8293121 (+) True G423093
TU485914 lncRNA downstream 75217 8310872 ~ 8311078 (+) True G423099
TU485916 lncRNA downstream 76759 8312414 ~ 8312712 (+) True G423101
TU485920 lncRNA downstream 89082 8324737 ~ 8324963 (+) True G423105
CI01000304_08222591_08229908.mRNA mRNA upstream 346 8222591 ~ 8230947 (+) True CI01000304_08222591_08229908
CI01000304_08120416_08124549.mRNA mRNA upstream 106696 8120416 ~ 8124597 (+) True CI01000304_08120416_08124549
CI01000304_07989774_08014921.mRNA mRNA upstream 215989 7988902 ~ 8015304 (+) True CI01000304_07989774_08014921
CI01000304_07979388_07979919.mRNA mRNA upstream 250573 7979078 ~ 7980720 (+) False CI01000304_07979388_07979919
CI01000304_07927790_07957821.mRNA mRNA upstream 272831 7927790 ~ 7958462 (+) True CI01000304_07927790_07957821
CI01000304_08547909_08562342.mRNA mRNA downstream 312254 8547909 ~ 8562604 (+) True CI01000304_08547909_08562342
CI01000304_08582404_08594691.mRNA mRNA downstream 346749 8582404 ~ 8594884 (+) True CI01000304_08582404_08594691
CI01000304_08624038_08653167.mRNA mRNA downstream 388383 8624038 ~ 8653550 (+) True CI01000304_08624038_08653167
CI01000304_08671901_08672203.mRNA mRNA downstream 436149 8671804 ~ 8672553 (+) False CI01000304_08671901_08672203
CI01000304_08741397_08752689.mRNA mRNA downstream 505742 8741397 ~ 8752689 (+) True CI01000304_08741397_08752689
TU485573 other upstream 250558 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 746605 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 876961 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU483706 other upstream 1988296 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 3054502 5173223 ~ 5173339 (+) True G420524
TU486091 other downstream 436115 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 713381 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 1328950 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 1884744 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 1953167 10188822 ~ 10189404 (+) False G424251

Expression Profile