RNA id: TCONS_00019629


Basic Information

Item Value
RNA id TCONS_00019629
length 2822
RNA type mRNA
GC content 0.48
exon number 24
gene id XLOC_009830
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19029297 ~ 19151800 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAATgagtaattgttttatgtaattgTCATAGCTGATGTTTTAAGATAAGAATCAGCAGACGATGTGTATTGTTCAGTACACAGAGCtgcattgtttttatgtttaaccTCTTTCTGTCTCTGTTAGATTATATCTCAGAAGCCGCCACCGGACTCCATCCTCTGTTCGAATGCAGGACAGACTAGACATCAGGCTTGTGTGAATAACGTACCATGTGCTGGCCAAGCATTGAGGAACGCTGTCTTATCCAATTGCCAGGATAACTGGAAAACACATGTTAAACTTGCCAAAATTATCAGGAGGACGTATATTGGTATAGAGCTGGTGGAATGGCTGATGGACCATTGCGAATTCATCCAAAACAGGGAAATAGCTTCCAAAATCTGGAATGTTCTCCTAGATTTGGGCATTCTGCTTTCAGGTACACAACCAATGCTGGGGAAGAACAAAGCAGACACACAAGTTTGGatgatttatataaaatgtttgattaatatttttattattattatgttataaggTACTATATACATTTGCAGTTTGCATAACAGCCGATTTCATCCAATGTGGTGCCTAAACAGAACATACATTTACATAAGCTTTGTCTAGATATAGCTTTATGTTGGATGTTTAACCCCAATGTGCTTCTGTTGTGTCCAGTGGAGCAGAACAATATATTTGAGGACTCCAGGTCTTTATACCAGTTCACCTTTAAGGAATGTGAGGCCCAGAGCTGTGATTTCAGAAATCAGGTCAACTGGCGGAGTGCAGTGCATCTGCTCCTTCAGCTGGTCCCACACGAGCAGCTCTGTGGTGGAACCCAGAGGCGCTGTAAAGAAGATAAACAGAAAACACCTGATGCTTGTAATCCAGTTCTTCAAATGAGGGCATTGGAGCATTTCACCTCAACAGTGCAGAATGAACTGTTGGCAGCACTGGCTCGCAAGGCGCAGACAAAATCAATGGAGGAGGACAGCAATCCACAGCACAATACTGACACCCCGGGATCCTCTTCTACTCCTGCTGTGCTCAAGCAGGTCCCTGGAGCGGGGACACGAGACCGAGAGGAGATCAGCCGTTTGGAGATGGTCCAGAGACTGGCCAAGGATGGATGCCGACTTCTGCACAGCCCGCTGAGAGTCAATGAAAGGCCTGCTGAGCCCCTCGGTGACGCAGCAGTCCGTGTGTGCGAGCGGAGCCACGAGGTGCTGCTTCCTAAGAGGACGACGTCACTCAAATctccctcctcttcctcctcctcctggaGCCGGAGGTACGCTGCCGTGCCTGCCAGCCCTGAAAAGGTTCTGGAGCATGTACTGGGTCAGTTGAGGCTGGACGAAGAACAGAAGAGCCTCCAGAGCAGAGAGACAGATAGTCTGCTGGATGATTTTCTTCTGACGTACCCAGTGTTCATGTCTACTAGTGACCTGTGTCAAGCTCTACTTGGTCACTATTGTTCCAAAAAAGGCCGGATGAAGGAGGAGTGGAGAGAGAGTCTGCTTAGGAAACGGAAAGTGCTGCACCTGCTGTCCCAGTGGAGCTCACTGTGCACAGAGCTGCCGCAGGACGATGACAACACCAAACTCTTCCTCAAGACCCTGTACAGACACGTTCTAGATGATCTCTACGAGTTCCCCCCGCTAGAGAAGGATCTCAAAGAACTTCAGAAACTTCTACGGATGCAAAGGAGACACACGGTGGATGAGTACTCTCCACAGAGGAAGAATAAAGCTCTGTTCCACCAGCTCAGTCTGAAGGAGAGCTGGCATCCCATGAGGGgaccagagagagagaggaaagaagtgctgTGTCGTGTGTACGTGACCGTCGACTCGTATGTTAGCGTGAGGACACACAGCGAGGTGTGTGTCCAGGAACTTCTGAGGGCTGTGGCTGAAAGACTGGACTGTGCTGAAGATGACATGGTGCTGATGGCCCTCACATATCCTGGAGAGAAAGTTGTGCTTGAGTTGGATCAGTGTGTGTTCTCGTCTTCTCTCAGTGCTGCTGAGAGGCTTCACGTCTTCAGAAGAGACCTGACGGAGATCATGAGTCCATTCACTGATAATGGGCAGCAGTGTTCAGGAAAGATGCTGAGCATGAACACATGGGATGTGTCAGTGTCGCTCACTAACTGCGACTGGAGTCTCTTCAGTAACATCCATGAGCAAGAGTTGGTGTATTTTACTCTGAGTCGTGACTCAAGTTCTGGCCACACGGTGGCGCTGGAGCAGCTGTTGCAACGCTGCAATGAGACTCAGCAGTGGGTGATGACTGAAGTCCTTCTGTGTTCAACCCTCTGTAAACGAGTGCAGCTCTTCAAGAAGTTCATCAAGATCGCAGCACACTGTAAAGCACAGAGGAACCTGAACTCATTATTTGCGATTATTCTGGGACTGAACAGTCCTGCTGTCAGTCGACTTACTCAGACATGGGAGAAAGTCCCTGGGAAGTTCAGGAAGTTGTTCTCCGAGCTGGAGAGCCTGACGGACCCTTCGTTAAACCACAAAGCCTACAGAGATGCCTTCAGGAAGATGAAGTCTCCCAAGATCCCTTTCCTACCTCTGCTTCTGAAAGATATTACCTTTATTCATGAAGGCAACAAAACCTTTCTCGACAACCTGGTCAACTTCGACAAGCTACACATGATAGCAGACACAGTACGAATTATCAGGCAGTGTCGGACAGATCATATGGgAAACTTGTTATTCCAGAAGGACAGCATGGAAGTGAGAACGTACATCAATTACCTGCACCTCATCGACAATCAGCAGACTCTCTTTGAGCTCTCACACAGACTTGAGCCCAAGACATAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061215-2 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RAPGEF5 (Rap guanine nucleotide exchange factor 5).

Ensembl:

ensembl_id ENSDART00000182430

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021704 lncRNA upstream 482496 18550523 ~ 18551058 (+) True XLOC_009827
TCONS_00019622 lncRNA upstream 492655 18535656 ~ 18540899 (+) False XLOC_009827
TCONS_00021703 lncRNA upstream 521355 18502566 ~ 18512199 (+) True XLOC_009826
TCONS_00021912 lncRNA upstream 1363097 17669300 ~ 17670457 (+) True XLOC_009821
TCONS_00021702 lncRNA upstream 1366623 17665784 ~ 17666931 (+) True XLOC_009820
TCONS_00021915 lncRNA downstream 224899 19375634 ~ 19412421 (+) False XLOC_009831
TCONS_00021916 lncRNA downstream 224971 19375706 ~ 19412421 (+) True XLOC_009831
TCONS_00021705 lncRNA downstream 230131 19380866 ~ 19381292 (+) True XLOC_009832
TCONS_00021917 lncRNA downstream 358003 19508738 ~ 19513991 (+) True XLOC_009833
TCONS_00019641 lncRNA downstream 535978 19686713 ~ 19715210 (+) True XLOC_009837
TCONS_00019626 mRNA upstream 10438 19014886 ~ 19023116 (+) True XLOC_009829
TCONS_00019625 mRNA upstream 15255 19013257 ~ 19018299 (+) False XLOC_009829
TCONS_00019624 mRNA upstream 20091 19013018 ~ 19013463 (+) False XLOC_009829
TCONS_00019623 mRNA upstream 35005 18974064 ~ 18998549 (+) True XLOC_009828
TCONS_00019621 mRNA upstream 464624 18535618 ~ 18568930 (+) False XLOC_009827
TCONS_00019632 mRNA downstream 385879 19536614 ~ 19538772 (+) False XLOC_009834
TCONS_00019633 mRNA downstream 385904 19536639 ~ 19538772 (+) False XLOC_009834
TCONS_00019634 mRNA downstream 386026 19536761 ~ 19537851 (+) False XLOC_009834
TCONS_00019635 mRNA downstream 386338 19537073 ~ 19538776 (+) True XLOC_009834
TCONS_00019636 mRNA downstream 486649 19637384 ~ 19646960 (+) False XLOC_009835
TCONS_00019610 other upstream 1462620 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019609 other upstream 1516472 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019587 other upstream 2879096 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019585 other upstream 3166389 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019535 other upstream 5591959 13424551 ~ 13441595 (+) False XLOC_009767
TCONS_00019642 other downstream 553689 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019651 other downstream 1017099 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019655 other downstream 1146088 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019658 other downstream 1346038 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019667 other downstream 1762678 20913413 ~ 20913484 (+) True XLOC_009854

Expression Profile

//