RNA id: CI01000304_09030903_09042018.mRNA



Basic Information


Item Value
RNA id CI01000304_09030903_09042018.mRNA
length 1566
RNA type mRNA
GC content 0.46
exon number 8
gene id CI01000304_09030903_09042018
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9030566 ~ 9042041 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTTATAAAGCCGCTGGGAGAGGGTTAGCACTGGACCATTTTCTCTCTGCGCTGTAAGGTAAGAGAGTGTTCGTTCATGATATGAATCTCATTTGAAGCAGCCGGAAACATTGCTTTGCATGAGTGGCCCTATCGCACGACTGACGCTAGGAACGCATGCGATTTGTCACCCGCTTCTGCAAAGAGCTTGCGAGTAAACGCCCCGTAACCGCCACAAAACAGCCTAAACCACAACAGGCCATTAAAGTTACCTCACCATGAAGAGAGATTACACCACCTTCTGAGGAATAAAGGTGAGAGAGACTTCTGCCTTGCATAACTGAAACCTTTCAGTAATATGGCCTCATTCAAGGTAGATGCCATGCTTAATCTTGTTCTACTGTCTTGTCTGATTTTCATGAATTATACTAACGCAAACAACAGCTCTGGAATAATTGACTTTGGATGTAGCTGCTTTATTCATTTTAATTTTCTGACTATGTCTGAGAAACCTGACCGCACTCGTCAGCTTTACTTCAGACACATTCACAGTGATGAGAAAGAGAGAGAGAAGAGCTCCGCTGGCGTCCTCCATCTCACAAGAACAAAAAGGAAATACAAGTTTAGTCAAGGCTACGGCGAAGCCTCGCTGCCTGAGGAGGGAGACAATGATCTTCAATTACCAACAACTCTCAGTCCAATTTACAGCGGACATGAGAAGAGGAAGGACGAAAGAATTGTCTTCAGAGGAGAGCTTCGGGTTGTAGAGGCTGAAACTTTCCAGAGAGAGCTGCGAACAGAGAAAAAGGCCAAGATGCACACGCTGGAACTCGAGTTGTGGCGGATCGGAGAAGAAAAAAAAAATCACAGAGTGCGCTTCACAAACAAAACATTTCAAGGCTACACTGGTGGAGTAAATCAAAAGCGCTTTGCATTATCCACCGAGACGCGCTCGCTTTTCTCCCTAATCACGTGCACCCAACCCCAGCAGACGGCAAACAGATCAGGAGCAGTTGAGATGGAGGCACACTTACTTCTCCACTGTGACAAATACACATCCTTAAGAGACTCTCAGTACAGTCAAATACAGCAGATTATTCATGAGTTCCAGTCACTCCATGAAACTGACAAACTGAAAATATTACATGGTGAAGGACCTGCTTCCTCTTTAGTAGCACATCATATTTCTAAATGCCACAAACTAAGAGGAGAAGCCTCCAGAGGCCTAAGCGACTGTGGAAAGGGGGCGTTTAGGCCCAATGAACGGGTGAGGAGGCACTACCATGAGGAAAAACACGACGCCTTTAGCATCATTACAAATGCGGCCGGAAAGGGCCGTGAATTTGTGTGCCCATCGATCTCCACGCCTGCTTATTTTGGCGCGATTGTAACTATCTTTCTTTTAGAGGTGCAAATGTGTAAACAAACTATCATCCAGATCTCAATTATTATTCATGCAGCTTCGCTCGTTTCATCCGCCATCCACGGGAACGCGTACGCTGTAGGTGATGTCAACAAGAAGCTGAAGAACACCAGCAGAAAGGAAGGCTATCTGATTCATTAATCCTGACTGTTGAGTATCAGGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU486512 lncRNA upstream 21867 9007995 ~ 9008699 (+) True G423649
TU486167 lncRNA upstream 95610 8916418 ~ 8934956 (+) True G423324
TU486141 lncRNA upstream 122090 8897982 ~ 8908476 (+) True G423310
TU486149 lncRNA upstream 125566 8904511 ~ 8905000 (+) True G423318
TU486140 lncRNA upstream 130641 8897982 ~ 8899925 (+) False G423310
TU486546 lncRNA downstream 23057 9065098 ~ 9068769 (+) True G423681
TU486533 lncRNA downstream 28048 9070089 ~ 9128263 (+) True G423670
TU486535 lncRNA downstream 86782 9128823 ~ 9134354 (+) True G423672
TU486569 lncRNA downstream 119680 9161721 ~ 9162080 (+) True G423696
TU486580 lncRNA downstream 152264 9194305 ~ 9194526 (+) True G423707
CI01000304_08895917_08897236.mRNA mRNA upstream 133034 8895603 ~ 8897532 (+) True CI01000304_08895917_08897236
CI01000304_08878926_08892802.mRNA mRNA upstream 136517 8878926 ~ 8894049 (+) True CI01000304_08878926_08892802
CI01000304_08864119_08871322.mRNA mRNA upstream 158877 8863777 ~ 8871689 (+) True CI01000304_08864119_08871322
CI01000304_08741397_08752689.mRNA mRNA upstream 277877 8741397 ~ 8752689 (+) True CI01000304_08741397_08752689
CI01000304_08671901_08672203.mRNA mRNA upstream 358013 8671804 ~ 8672553 (+) False CI01000304_08671901_08672203
CI01000304_09178746_09214392.mRNA mRNA downstream 136633 9178674 ~ 9215108 (+) True CI01000304_09178746_09214392
CI01000304_09298662_09308685.mRNA mRNA downstream 256541 9298582 ~ 9308867 (+) True CI01000304_09298662_09308685
CI01000304_09310530_09315160.mRNA mRNA downstream 268489 9310530 ~ 9315193 (+) True CI01000304_09310530_09315160
CI01000304_09325707_09339195.mRNA mRNA downstream 283666 9325707 ~ 9339741 (+) True CI01000304_09325707_09339195
CI01000304_09359193_09364869.mRNA mRNA downstream 317056 9359097 ~ 9365174 (+) True CI01000304_09359193_09364869
TU486477 other upstream 81144 8949036 ~ 8949422 (+) True G423614
TU486091 other upstream 358011 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU485809 other upstream 795606 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 1049831 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 1545878 7484141 ~ 7484688 (+) True G421435
TU486746 other downstream 522564 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 1078358 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 1146781 10188822 ~ 10189404 (+) False G424251
TU487195 other downstream 1147274 10189315 ~ 10189404 (+) True G424251
TU487556 other downstream 1513245 10555614 ~ 10555704 (+) True G424559

Expression Profile