RNA id: CI01000304_09284328_09286980.mRNA


Basic Information

Item Value
RNA id CI01000304_09284328_09286980.mRNA
length 677
RNA type mRNA
GC content 0.44
exon number 4
gene id CI01000304_09284328_09286980
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9284189 ~ 9287032 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATGCAAATTAATTAACTCCAGATTACCGTAGGCATGGTGAAGAGTGAAATATGACCCACTATGTCTCTCAGTTTTTGAACAAGATGAGCTCATTAATGTGGTATTTGCTTTTTGTGACTTTGATAACCTCTCAAACAGTGCTTGCAAATGAGTCCTCAACGCTGGATATGAAGGTCGATGCATGTAATATTACCGGCGTTTGGCGGAATGAGCTGGGCTCCACGCTGCGTGTGAAGGCAGAGGGGTCAGAGGTCAGAGGTGTTTATCAGACCGCAGTGGAGAGTACGCGCGGCGCCGCTGGTTTACACCGCACAGCACGAATCATCGGGATAGTTGGTGATGGGACTCAACCTACCGTTTCATTCTCCGTGCTGTGGGAGAAAGGTTCATGTTCTGCTTGGGTTGGTCAGTGCTTTATTTTACGTGACGGTGCACAAGTGCTGAAAACGTTCTGGATGTTGCGCAGTGTAGCCGACAACTTGGCTGGTGACTGGGGAAGTACAAGGTTGGGAGAAGATCTTTTTTTCAAGACTTGAATTTCAAATGAAGTCTGTAATAGATTCAATGTCATTTAAATTCTTTAAAGGTGTTGATTTTTCAAGGAGCTTGAGCTTGTAGTATTTAAACCTACTGAGACATTTAAAAGCCTTGTATAAAACCCTCAAGCTTAATAAA

Function

GO:

id name namespace
GO:0009374 biotin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486979 lncRNA downstream 20446 9263533 ~ 9263743 (-) True G424079
TU486975 lncRNA downstream 27842 9255908 ~ 9256347 (-) True G424075
TU486927 lncRNA downstream 67551 9216428 ~ 9216638 (-) True G424033
TU486919 lncRNA downstream 76495 9207483 ~ 9207694 (-) True G424025
TU486910 lncRNA downstream 90661 9193299 ~ 9193528 (-) True G424016
TU486988 lncRNA upstream 5664 9292696 ~ 9293123 (-) True G424088
TU486989 lncRNA upstream 8812 9295844 ~ 9296066 (-) True G424089
TU486991 lncRNA upstream 14799 9301831 ~ 9302281 (-) True G424091
TU486946 lncRNA upstream 29627 9316659 ~ 9323420 (-) False G424051
TU486947 lncRNA upstream 29627 9316659 ~ 9374445 (-) True G424051
CI01000304_09046090_09129612.mRNA mRNA downstream 154577 9046090 ~ 9129612 (-) True CI01000304_09046090_09129612
CI01000304_08913076_08936241.mRNA mRNA downstream 347948 8912702 ~ 8936241 (-) True CI01000304_08913076_08936241
CI01000304_08904762_08909795.mRNA mRNA downstream 373699 8904478 ~ 8910490 (-) True CI01000304_08904762_08909795
CI01000304_08899490_08900383.mRNA mRNA downstream 383417 8899161 ~ 8900772 (-) True CI01000304_08899490_08900383
CI01000304_08836330_08859572.mRNA mRNA downstream 423460 8835882 ~ 8860729 (-) True CI01000304_08836330_08859572
CI01000304_09342385_09345935.mRNA mRNA upstream 54822 9341854 ~ 9345935 (-) True CI01000304_09342385_09345935
CI01000304_09508090_09519201.mRNA mRNA upstream 220265 9507297 ~ 9519333 (-) True CI01000304_09508090_09519201
CI01000304_09566730_09575706.mRNA mRNA upstream 279698 9566730 ~ 9575706 (-) False CI01000304_09566730_09575706
CI01000304_09577749_09578512.mRNA mRNA upstream 289087 9576119 ~ 9578512 (-) True CI01000304_09577749_09578512
CI01000304_09609674_09619712.mRNA mRNA upstream 322478 9609510 ~ 9620030 (-) True CI01000304_09609674_09619712
TU486232 other downstream 418893 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 1631486 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2501143 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 2652690 6631086 ~ 6631499 (-) True G422354
TU484958 other downstream 2800694 6477451 ~ 6479033 (-) True G422250
TU487066 other upstream 281324 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 449714 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 866414 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 866827 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 903542 10192696 ~ 10192895 (-) True G424459

Expression Profile