RNA id: CI01000304_09457224_09468602.mRNA



Basic Information


Item Value
RNA id CI01000304_09457224_09468602.mRNA
length 3730
RNA type mRNA
GC content 0.42
exon number 7
gene id CI01000304_09457224_09468602
representative False

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9457068 ~ 9468909 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATATAACTGCCACCTCAAATTCTTTTCATACACGATGCTTCTATTCATCTCTCGTCGCCGTGTATGGAGTTAATGTCTGCATTTGGAATTTCGTATATTTAAAGGATACACGGATTGATTGTTGCATTTTTTAACCATCGGTGCAGTTGAGACAATGCCTGATGCAATGATACGGCACTCGGTGCTGTTTTTGAGTCTTCTGATTCACATAGCGCGAGGACAGGTCAGTTACTCCATTCCAGAAGAAATGGCAAAAGGATCGATGGTGGGAAATATTGCGCAGGATTTGGGCTTGGATTTACAACGTTTAAAGTCAGGAAAAGCGCGGCTATTTACAAGAGACAGCACGGAATACATCGAACTGAACAGAAACACGGGATGGCTGCTTATCAAAGAGAAAATGGATCGCGAGTCTCTTTGTGCAAAAACAACTCCGTGTGCTTTGCATCTTCAAGTGATTTTGGACAACCCGATGGAATTATACACGATTACAATCCAAATCACAGATATAAATGATAACGCTCCCAGTTTCCAGAAAAAAGACTTTAGATTTCAAATCAGCGAATTGGCGGTGGCGGGAGCTGGTTTTATGCTCGGGAGAGCTTTTGATCCGGATGTAGGAACAAATGGCCTTCAACGGTACTCGCTTAAACCGACTGATAAATTCCGGCTTGAATTGCACAATCAGGCAGATGGTAGTAAAAATGTCGAGATGATTTTACAAAAACCCCTTGATAGAGAAACGCAAAGCTCGTTTACTTTGTTGCTTGAAGCTTTTGATGGAGGCGATCCAGTGCTCTCTGGCACTGTAGAGATACATATTACTGTGTTAGATATTAATGATAATGCCCCTGCTTTTACACAAAAAGAATATAAAACCACCACAACAGAAAACGCACCAAAGGGTACTATATTAACAGTCGTGAGCGCGTCTGATGCAGACGAGGGGTCTAACAGTGTAGTGACGTACTACATATCTGACACTATGGACAGTAATGTGGCCGACATGTTTCTTGTTAACGAAAAAACTGGTGAAGTAATATTAAATGGTCATGTTGACTATGAAAAGGTGAGCCATTATAAACTTAATATTCAGGCAAAAGATCAAGGAGGACTCTCTAACGCATGCAAAGTAATTATTGATGTGCTGGATATAAATGATAATTCACCTAGTATTCAAATCCTGTCAAGTTCTCATTCAGTATCTGAAGGGTCCAAGTCTGGTACTGTTGTTGCAATGCTAAATGTTGATGATCTTGATTCAGGAGTAAATGGTCAGGTTCAGTGCTTCATAAGTGAGGATATTCCCTTTGCTATTACATCTCAATCTAGCAGTTTCTTCAGCCTACAAACAGAGCAGGAATTGGACAGAGAGAGAGAATCTGAGTACAATATCAGTGTAATATGCACTGATGAGGGAGTGCCCGCGCTCTCCAGCAGTGTCTCTCTCCGTGTACAGATATCAGATATACATGTTACTGTACTTGATGCCAATGATAATTCTCCCGTATTTACGCAAAAACTATATAAAGCTACACTGACTGAAAATGCAGCGAAAGGGACTAAACTGATCACAGTTAGTGCTACTGACGCAGACGAAGGATCTTACGGTCAGGTGACGTACTACATTGCAAGCACAGAAGATATTGCGCGAAACATGTTTATTATTGATCAGCATAGTGGCGAAGTCACCTTAAATGGTCTCGTCGACTTTGAAAAAGCAAATCATTATGAGCTTGATATTCAGGCTAAAGATCAAGGGGGGCTTTCTGATTCCTGTAAGCTGATTATCGATGTGCTGGATATTAATGATAACAAACCAGTGATAAACGTACTCTCTATGTCAAGCTCTGTGTCTGAGGACTCTACACCCGGCACAGTTGTTGCTATGATGAAAGTAGATGATGCTGACTCAGGTGTGAACGGCCAGATCCACTGCATCATAAATAACAATATTCCATTTGCTCTTACATCACCATCCAGCAATTTCATCAGTCTGCGTATAGAGCAGCAGCTGGACAGAGAAAAAGATGCTGAATACAATATCAGTGTCACATGCTCTGATCAGGGGGTGCCTGCGCTCTCCAGCAGCGCCTCTCTGTCTTTACAGATATCAGATGTGAATGACAATGCTCCTGTCTTTGAGAAAACTAACTATGAGGCCTGTGTGCTGGAGAATAACACACCTGGTCTCTCTATATTTTCAGTTAAAGCCAGTGATGCTGATTGGAATCAGAATGCTCGTGTTTCATATATTCTAGAAGACAGCACTGTTAATGGAGTCTCTGTCTCATCATATGTGTCAGTGCAACCTGACAGCGGACTGATTACAGCTATGCGCTCTTTTGACTATGAGACACTGAAACATTTCCACTTCCGGGTAAAAGCGCAAGATGGAGGCTCTCCTCCGCTCAGTAGTAACGTGACAGTGAAAATTACTGTTCAAGATCAGAATGACAACGCTCCTCAGGTTCTGTATCCAGTACAGACTGGAGTATGCGCGCTGGCTTTATTTTCCTCTCGCGTGAGCGGACAGATTCGTTATTCTATACCCGAGGAAATGTCGGTGGGCTCGTTTGTTGGAAATATTGCCTCGGACCTTGGGCTTGAGCCGAAGAGACTGATTTCAGGAAAAGCGCGTGTTTTCACCGCGGACAGCATATGCGCGTTGGTTTTATTTTCCTCTCGCGTGAGCGGACAGATTCGTTATTCTATACCCGAGGAAATGCCGGTGGGCTCATTTGTTGGAAATATTGCCTCGGACCTTGGGCTTGAGCCGAAGAGACTGATTTCAGGAAAAGCGCGTGTTTTCACCGCGGACAGCACTGTGGTCTCCATTAACGTGGCTGTGGCTGACAGCTTTCCTGAAGTGTTGTCAGAGTTCACAGACTTTACACATGAAAAACAATATAACGACAACCTGACTTTTTATTTAATCTTGGCTCTTGCGGTGGTCTCCCTGCTCTTCATAGTCTCAGTTATTTCAATCATTTCAGTGAAAATCTACAGATGGAGGCAGAATAAGTTATTTTATGAATCAGGGGCAAATCTACCTGTAATTCCATATTACCCTCCAGTCTATGCAGACGGCACGTTACAGCATGTGTATAATTATGAAATGTGCGGGACAACTGATTCAAGGATGAGTGACATGAAGTTTGTCAGGCCCTACAGTCAGAACACACTGGTGAGCCAGAGTCGTTTGGGGACAGTTCAGAGAGAAAAGAAGGAGCAGGAGGTTGATGACCTGACTTTAGAGAGCTTCGTTTTTGGCTCAGTATATCAGGGCTTTGTAATACTGCAAACATTCTTCTATTATTTCTGCATTATTATTGTTGCATTTTATTTTTTAGAAGGGGTAGGAGCCTATCCATGTGTTTTTGTGGGGGATGGTGATATTTTTATGGACGCTTTAAGCTGAAGAGTCAGACTTGTACACCCCCCTTTCTGTCTCTCCCATGCTCCCTCTTGTGCCTAATAGAAGTGTATACCACTATTAGTGTTATTTTATTTATTTATTTATTTTTTTTCTTAAATTTGTACATACTGTACGATTACTATTGATTGTGGCATGTTTTGATTGCATACTGATCATGATCTGCTCCTTTAGCAGTAGAGATGATAAAACATCTGGAGGTAGCTACTAAATAATTGCTGTGCATAAATTATATACATAAACTGCATCATAAAATATTGCATTAGTTAATTTCAGATTAATAGAAATACAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU486632 lncRNA upstream 127429 9329053 ~ 9329639 (+) True G423753
TU486690 lncRNA upstream 153992 9302829 ~ 9303076 (+) True G423809
TU486684 lncRNA upstream 163905 9292803 ~ 9293163 (+) True G423803
TU486626 lncRNA upstream 169619 9284128 ~ 9287449 (+) True G423747
TU486678 lncRNA upstream 175635 9281232 ~ 9281433 (+) True G423799
TU486710 lncRNA downstream 48962 9517871 ~ 9518357 (+) True G423826
TU486727 lncRNA downstream 51573 9520482 ~ 9520813 (+) True G423843
TU486733 lncRNA downstream 59067 9527976 ~ 9528197 (+) True G423848
TU486720 lncRNA downstream 97512 9566421 ~ 9567016 (+) True G423836
TU486752 lncRNA downstream 101109 9570018 ~ 9570273 (+) True G423867
CI01000304_09445257_09456640.mRNA mRNA upstream 154 9444764 ~ 9456914 (+) True CI01000304_09445257_09456640
CI01000304_09439203_09444240.mRNA mRNA upstream 12342 9437930 ~ 9444726 (+) True CI01000304_09439203_09444240
CI01000304_09415682_09436716.mRNA mRNA upstream 19256 9415146 ~ 9437812 (+) True CI01000304_09415682_09436716
CI01000304_09401866_09405032.mRNA mRNA upstream 51923 9401866 ~ 9405145 (+) True CI01000304_09401866_09405032
CI01000304_09395317_09401634.mRNA mRNA upstream 55434 9395317 ~ 9401634 (+) True CI01000304_09395317_09401634
CI01000304_09471237_09479915.mRNA mRNA downstream 2328 9471237 ~ 9480130 (+) True CI01000304_09471237_09479915
CI01000304_09481220_09484457.mRNA mRNA downstream 12311 9481220 ~ 9484546 (+) True CI01000304_09481220_09484457
CI01000304_09484625_09487668.mRNA mRNA downstream 15716 9484625 ~ 9487692 (+) True CI01000304_09484625_09487668
CI01000304_09488898_09490778.mRNA mRNA downstream 19632 9488541 ~ 9490968 (+) True CI01000304_09488898_09490778
CI01000304_09491577_09494024.mRNA mRNA downstream 22668 9491577 ~ 9494024 (+) True CI01000304_09491577_09494024
TU486477 other upstream 507646 8949036 ~ 8949422 (+) True G423614
TU486091 other upstream 784513 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU485809 other upstream 1222108 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 1476333 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 1972380 7484141 ~ 7484688 (+) True G421435
TU486746 other downstream 95696 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 651490 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 719913 10188822 ~ 10189404 (+) False G424251
TU487195 other downstream 720406 10189315 ~ 10189404 (+) True G424251
TU487556 other downstream 1086377 10555614 ~ 10555704 (+) True G424559

Expression Profile