RNA id: CI01000304_09532680_09535197.mRNA



Basic Information


Item Value
RNA id CI01000304_09532680_09535197.mRNA
length 2384
RNA type mRNA
GC content 0.49
exon number 7
gene id CI01000304_09532680_09535197
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9532680 ~ 9536431 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTGAAGTTTCGGAGTATCTGGTATCAGAGTGACAACGGTTTTATCATGGGACAGCTAAGTTCGCGACCGAACAAAGCGTCTGATGAGTGTGTACTCGAACCCTGTACATTACTCAATTACACCACCAACACGGCGGAGCACCATCCTCCTTGGGTTGATGAGACGCCTGTTGGTACTAGTGAGATTGATGGAGGGAGAGAGGAGAAAAGGAGGAGGACAAGATTCTGGAAGTGGCCCACTCTCCACTTTCCCAGATCTGCAAAATACGACCTGGTTCAAGCTGAGAAAGACTATCAGAATGAGGCCGGATTATACCGTAAACTTTCCAAAGACCACATTTGCAGCCGCTATAAAGTTGGCGACAAGCTGGGTGAAGGAGGATTTGGCTCTGTGTATGCAGGGACTCGATGCAAGGATGGACTTGAGGTGGCTGTGAAATATTCAGTGAAGATGCCAGACATGCCATATATCAAAGTGATCGGCCTGACGTTGATGGCCAATAAGGGCCCCAGCGTTCCTCAGATAATTAAACTGCTGGACTGGCAGGACGACGCAGACCACTGCATCATGGTCATGGAGCGGCCCTTGCCTTGCATGGACATGTTTAGTTTCATGGAGCTCCAAGGAGGAAGCCTCAACGAGGGGACAGCACGACATGTTATGCGGCAGGTCATTCACGCTGCTAACGTTTGTTGTGAGCGCGGTGTCTTCCATCGGGACATCAAACCGGAAAACCTGCTGGTGAACCAGGACACCATGGAGGTTAAATTGATTGACTTTGGGTGCGGTGCGCTCATGAAGAAATCTGCCTTCAAAGTCTTCAGTGGCACAGAAGGTTACTGTCCACCAGAGGTCGAATACAACGGCAAGTACCACGCAAAGCCGACGACAGTGTGGTCACTAGGGGTCCTCCTGTTCATAATGGTGTGCGGAGGTTATCCCACAGCCGACGACCTGTTCATGATCTATGCCAACATCTGGACCAGTCCTGGTCTGTCACAAGAATGCTGCGATATGATTTGCGCTTGTCTGCACCCTCAACCACAGAAGAGACTCGTTCTGGAGAAGATGCATCTTCATGACTGGTTAAAGCTTTGTGTCTGGCGGGCTGACATGAGTGGCGTTTACATCCTGCCACTTGGGCCATAGAGTCTTGCGGGGCCGGCAAATCCTGTGAGTGTCTGGAGCCTTGAGTTGAAGCAGCAATATTTGCATCCAGCGGCATTGCTTGTTTTGGGATCTGTAAACAATAGTTGTTATATATTACAGCTTGATCCTCCTCTGCCCCCTCCTCCAGCTGAGAGTTGAGCTCCTGAACTCAAGAGGTGCTCTAGCGACTGACGCTAGAGACTGCGGTCTTTAGCCTCCTTGTTAGAGCGCTCACCTCCCATGCGGACGGGCCCGGGTTCGCGTCCCGGTTGGAGCATGCAGGTGCGAACTAGAGGGGCTACAATAGCAGCCAGCAGCGAGTCCCCCGTTCCCTGCTCCACCCCATCATGGCGAACGACGGCGACTCCTCCGCTCCCTTTTCGGATGGCAGCCACCCCATCTTGACCCAGGACCATCTGTTGTATCATCGCTCCAGCACCACTGCCTCGGGCAGCCACTCGCGGTCTTCACTCTTCCGTGCTGCCTGACCTCCTCAGCACTGCAATCCCCCTCAGCAGCAAGGGCTGTCCAACAGCATGTCCCTCCTTCCTCCCGGTTTTTGGCACCAATGTAACGCAGTTCGTATATACGGGAAGAAGGAGGTGGGAACCGGCGAACGTTCAACATCTTTAATAAATAAAATAAACAAAAAACAAAACAAAAATAAAAAGGCGGCAGTCCCTCAGACTGCCGCACACGCAAACATAATAAAAACATAACATAAAGTCCAGGCCTGGTTTTCTCTCGTCCTTCACTGTCGTCGCTACTCCCTTTATGCTTCCGGAGCTCCTCCATGAGAGATACGAGGTGCAGTGCGCAGGTGACGCTCCTTAGCAATCATGCCACCGGCCTCGCTCCGTTCTCTCATGGCTCTCACCCCGCCCTGCTTGTCACTATATATATATATATATTATAAAAAAAATTTGTTAGACATTTTTTCTTTTATTGTTAATATTTATGTACAATAAATATATATTTTTATTGCACTGTTGCACTGTTAGAGTTTCAAAGTACATTGCCCTGACATAGTCGCCTTTGAGGCTCTTATAGAAGTTATTTCTGTTTCTTCTGAACCCACTACGGTCCCAGAGCTCCCTGTCATGAACTCAGGTCAAAAATCTACTATCATCTACTGTCTTTCACACTTTAAAATGAATACAATTAATGAACAGAGCTGAGGTATTTAAAAACTATATAAAAGATATAAAAGCAATCACTCCTTCTTAGTGTTAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU486733 lncRNA upstream 4483 9527976 ~ 9528197 (+) True G423848
TU486727 lncRNA upstream 11867 9520482 ~ 9520813 (+) True G423843
TU486710 lncRNA upstream 14323 9517871 ~ 9518357 (+) True G423826
TU486624 lncRNA upstream 69742 9459852 ~ 9462938 (+) True CI01000304_09457224_09468602
TU486632 lncRNA upstream 203041 9329053 ~ 9329639 (+) True G423753
TU486720 lncRNA downstream 29990 9566421 ~ 9567016 (+) True G423836
TU486752 lncRNA downstream 33587 9570018 ~ 9570273 (+) True G423867
TU486725 lncRNA downstream 43144 9579575 ~ 9609161 (+) True G423841
TU486726 lncRNA downstream 121815 9658246 ~ 9659272 (+) True G423842
TU486761 lncRNA downstream 123277 9659708 ~ 9660158 (+) True G423876
CI01000304_09529802_09531061.mRNA mRNA upstream 1376 9529391 ~ 9531304 (+) True CI01000304_09529802_09531061
CI01000304_09494392_09503344.mRNA mRNA upstream 29092 9494392 ~ 9503588 (+) True CI01000304_09494392_09503344
CI01000304_09491577_09494024.mRNA mRNA upstream 38656 9491577 ~ 9494024 (+) True CI01000304_09491577_09494024
CI01000304_09488898_09490778.mRNA mRNA upstream 41712 9488541 ~ 9490968 (+) True CI01000304_09488898_09490778
CI01000304_09484625_09487668.mRNA mRNA upstream 44988 9484625 ~ 9487692 (+) True CI01000304_09484625_09487668
CI01000304_09564068_09565679.mRNA mRNA downstream 24574 9561005 ~ 9565778 (+) False CI01000304_09564068_09565679
CI01000304_09683383_09690928.mRNA mRNA downstream 146952 9683383 ~ 9690941 (+) True CI01000304_09683383_09690928
CI01000304_09692774_09694613.mRNA mRNA downstream 156343 9692774 ~ 9694613 (+) True CI01000304_09692774_09694613
CI01000304_09695997_09696577.mRNA mRNA downstream 159566 9695997 ~ 9697143 (+) True CI01000304_09695997_09696577
CI01000304_09757695_09760278.mRNA mRNA downstream 220662 9757093 ~ 9760699 (+) True CI01000304_09757695_09760278
TU486477 other upstream 583258 8949036 ~ 8949422 (+) True G423614
TU486091 other upstream 860125 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU485809 other upstream 1297720 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 1551945 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 2047992 7484141 ~ 7484688 (+) True G421435
TU486746 other downstream 28174 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 583968 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 652391 10188822 ~ 10189404 (+) False G424251
TU487195 other downstream 652884 10189315 ~ 10189404 (+) True G424251
TU487556 other downstream 1018855 10555614 ~ 10555704 (+) True G424559

Expression Profile