RNA id: TU486746


Basic Information

Item Value
RNA id TU486746
length 320
RNA type TUCP
GC content 0.51
exon number 2
gene id CI01000304_09564068_09565679
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9561005 ~ 9565778 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGAAAGCATTTGGAATCTTCTACCTCCCTCTGCTGGTCATGTGTGGAATGTACCATCGAATATTCTGTGTTGCACGTGAGCAGGTGCGTCGTATACGGGCAACCACTCCTTCGTCTGCTCAGGCTGCAAATGCAGTTGCCACTGCACGGGAACACAAAGCCACAGTGACCCTGGCTGCAGTGCTTGGTGCTTTTGTCATTTGCTGGTTCCCCTATTTCACCTACTTCACATACACGGGGATGTGGGCAGAGACCCATCCAAACAAACTGACTCACTCTATCGTTCTTTGGTTGGGATACCTCAACTCTGCACTGAACCC

Function

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04150 HRH2; histamine receptor H2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486733 lncRNA upstream 36408 9527976 ~ 9528197 (+) True G423848
TU486727 lncRNA upstream 43792 9520482 ~ 9520813 (+) True G423843
TU486710 lncRNA upstream 46248 9517871 ~ 9518357 (+) True G423826
TU486624 lncRNA upstream 101667 9459852 ~ 9462938 (+) True CI01000304_09457224_09468602
TU486632 lncRNA upstream 234966 9329053 ~ 9329639 (+) True G423753
TU486720 lncRNA downstream 848 9566421 ~ 9567016 (+) True G423836
TU486752 lncRNA downstream 4445 9570018 ~ 9570273 (+) True G423867
TU486725 lncRNA downstream 14002 9579575 ~ 9609161 (+) True G423841
TU486726 lncRNA downstream 92673 9658246 ~ 9659272 (+) True G423842
TU486761 lncRNA downstream 94135 9659708 ~ 9660158 (+) True G423876
CI01000304_09532680_09535197.mRNA mRNA upstream 28174 9532680 ~ 9536431 (+) True CI01000304_09532680_09535197
CI01000304_09529802_09531061.mRNA mRNA upstream 33301 9529391 ~ 9531304 (+) True CI01000304_09529802_09531061
CI01000304_09494392_09503344.mRNA mRNA upstream 61017 9494392 ~ 9503588 (+) True CI01000304_09494392_09503344
CI01000304_09491577_09494024.mRNA mRNA upstream 70581 9491577 ~ 9494024 (+) True CI01000304_09491577_09494024
CI01000304_09488898_09490778.mRNA mRNA upstream 73637 9488541 ~ 9490968 (+) True CI01000304_09488898_09490778
CI01000304_09683383_09690928.mRNA mRNA downstream 117810 9683383 ~ 9690941 (+) True CI01000304_09683383_09690928
CI01000304_09692774_09694613.mRNA mRNA downstream 127201 9692774 ~ 9694613 (+) True CI01000304_09692774_09694613
CI01000304_09695997_09696577.mRNA mRNA downstream 130424 9695997 ~ 9697143 (+) True CI01000304_09695997_09696577
CI01000304_09757695_09760278.mRNA mRNA downstream 191520 9757093 ~ 9760699 (+) True CI01000304_09757695_09760278
CI01000304_09879900_09938234.mRNA mRNA downstream 314281 9879854 ~ 9939321 (+) True CI01000304_09879900_09938234
TU486477 other upstream 615183 8949036 ~ 8949422 (+) True G423614
TU486091 other upstream 892050 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU485809 other upstream 1329645 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 1583870 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 2079917 7484141 ~ 7484688 (+) True G421435
TU487178 other downstream 554826 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 623249 10188822 ~ 10189404 (+) False G424251
TU487195 other downstream 623742 10189315 ~ 10189404 (+) True G424251
TU487556 other downstream 989713 10555614 ~ 10555704 (+) True G424559
TU488854 other downstream 2863132 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019

Expression Profile