RNA id: CI01000304_09577749_09578512.mRNA



Basic Information


Item Value
RNA id CI01000304_09577749_09578512.mRNA
length 2116
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000304_09577749_09578512
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9576119 ~ 9578512 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGGTCCCATCCAGTGTGCCGTACACCTGTGGTACAAGCTAAAGATTGGAAATAACCGCTGGTCGGCGCGTCTGCTTTGTTTTGACTATGATGTCGTTTACAAGCCAGGTTCACAAAACCATACAGCAGACTGCCTTTCACGTCTCCCTCTGGATGTGCCAGCGGATCCTTCCACAGATATGGAACCTGAACTTGTGGCTCTGATTTCTTCCACACTGAGTTCCCTTCTGGTCTCTGACTTTGACAGTGCTTGTTCCTCATGCTCAGAAATGGTGGCTCTTCATGAACAGATTAGCCGTGGCTGGCCTCCATCTATACGGGCTGTTGCCCAGAATCTAATGCCCTACTACAAAATTAGGGATGAACTCTCAGTGCAGGGTCATTACATCTTCCGTGGTTCCAGATTAGTGGTGCCTGTCTCATTGCGTCATACACTGATCACCCTGTCCCATGAAAGCCACCAGGGGATCGTACGCACTAAATAGCGTCTGCATGACCTTTACTGGTGGCCTTGTATGGACTCTCAGGTTCAGACCTGTATATCTGCCTGTGCCCCTTGTCAGTCTAACAACAAAACAGCTCTCACTCATCCAGCGCCTCTACAACCTGTTCCACTCCTTGACGGTCCCTGGAAGAAATTAGGCCTCGATATCGTTGGGCCATTTGAGACTGCCATTCCTGCTAGTCGGTATGCTGTGACATTGACCGACTACTATTCAAAGTGGCCTGAACTTGCCTTTTATCCATCTGCCACAACTGACGGTGTCATAGATTTTCTGACCACCGTTTTCAGTCGTCATGGAAATCCGGAAAGCATTGTCACTGATAACGGGACGCAGTTCACATCAGCTGCCTTTGCTGAATTTCTTTAATTTCTTAACTGCTCTATGGACGTAAAATGCGAACCAGACTGGACATTTTGCCCATTGCTCCTATGTCGAATTCATCTGTCCATGACACTGTGGAAAGGAAACAAGCCAAGATGAAACAGTACAAACAGTACACTGACATTAAGCGGCATGCATGTACCCCGTCTTTTGCTCAAGGGGAGAGAGTGAGGGTCAGAATTCCTCACTTAGTCCCTAAAGCACACTCCAGATTCTCTGCTCCGTTAACAGTGGAAAAGCGTGTGAGTCCAAACACTTTTCTGCTAAGTGATGGGAAGAGATGGAATGTCACACACTTGGCTCGTTCTCATTCTGCGCCCAGAAGTGGAGGTCAAGTTGATACACCAACTTGCACACAACCCATTCAGGGTACTTCTCCAAAACAGCCACGTATTAGATTCAAACCTAAGTGGCACAAAGACTATGTAATGTAACTGATTGAGATTTGAAGGGTTAAGAACAGTTTTTTTAGTTGAACCAAGCTGTAAAAGAAATGTACTTTAAAAAGTGTTCTGAGTTTCATGAACGTGAAGACTTTTGACTGCCATATGTTAGTTATGTTAAAACAGATGTCACCTTCTTTTGTAACTACAATTGCAGCCTTTATTTCAATAATTTCATAATACGATCAGTGTTCAGTTACTGAAGTAGTTTTCTTAACAGAGAGGGAAGATGTTGTGTTCTGTGAATCATTGTGATACTGAGTATGGTCGCTAGAGGGCAGTAAAACCTAATAAGAAACCTAGAGAGGTGATGAAGAAATTGAGTTGTTGATTTGCTATGGTAATGTTTACTGATGCTTCCTACATTAAAGACAACCGTTTGGAGCTAGCTTTTCTTTTCATTCTTTTTTACATCTTACAACACCACAAGTGTGCATATAGTATGGGACGTCCCCTAAGAAGTGGCCTTTGTTTTTATCAGAAATAAGATCTTTATAGGCCTCTTAAGTAGTAAAATGTGACTTATTTTACAAAACGCTGGAGTAAAATGTTTTCATATGAAGTGTGCATACAGTATGGCAGATTGAATTCAAGAGAAACTGTCATTTTAATACTATATAAAAAAAAAATATATATGAAAAAGAGGTATTAAGTGTATACTTTATTTTAGTTTTTTTTCTGCTTTTTGCAAATAATTTTGCTGTAAACCATAAAAATGTCTTGAGATGTGACCTATAAAGAAAGAAAAATACACAACTGTCAAAGACAACGTGAGAGTAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU487105 lncRNA downstream 13030 9562722 ~ 9563089 (-) True G424181
TU487071 lncRNA downstream 44795 9529683 ~ 9531324 (-) True G424162
TU487062 lncRNA downstream 55718 9520143 ~ 9520401 (-) True G424158
TU486949 lncRNA downstream 72808 9499007 ~ 9503311 (-) True G424052
TU486965 lncRNA downstream 78526 9471070 ~ 9497593 (-) True G424065
TU487112 lncRNA upstream 66985 9645497 ~ 9645723 (-) True G424187
TU487113 lncRNA upstream 67302 9645814 ~ 9646065 (-) True G424188
TU487115 lncRNA upstream 71149 9649661 ~ 9649877 (-) True G424190
TU487079 lncRNA upstream 79818 9658330 ~ 9659287 (-) True G424170
TU487121 lncRNA upstream 81071 9659583 ~ 9660325 (-) True G424196
CI01000304_09566730_09575706.mRNA mRNA downstream 413 9566730 ~ 9575706 (-) False CI01000304_09566730_09575706
CI01000304_09508090_09519201.mRNA mRNA downstream 56786 9507297 ~ 9519333 (-) True CI01000304_09508090_09519201
CI01000304_09342385_09345935.mRNA mRNA downstream 230184 9341854 ~ 9345935 (-) True CI01000304_09342385_09345935
CI01000304_09284328_09286980.mRNA mRNA downstream 289087 9284189 ~ 9287032 (-) True CI01000304_09284328_09286980
CI01000304_09046090_09129612.mRNA mRNA downstream 446507 9046090 ~ 9129612 (-) True CI01000304_09046090_09129612
CI01000304_09609674_09619712.mRNA mRNA upstream 30998 9609510 ~ 9620030 (-) True CI01000304_09609674_09619712
CI01000304_09622805_09640521.mRNA mRNA upstream 43864 9622376 ~ 9640540 (-) True CI01000304_09622805_09640521
CI01000304_09699524_09703985.mRNA mRNA upstream 120856 9699368 ~ 9706659 (-) True CI01000304_09699524_09703985
CI01000304_09720695_09725068.mRNA mRNA upstream 141764 9720276 ~ 9725068 (-) True CI01000304_09720695_09725068
CI01000304_09726631_09727403.mRNA mRNA upstream 147435 9725947 ~ 9730308 (-) True CI01000304_09726631_09727403
TU487066 other downstream 7085 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU486232 other downstream 710823 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 1923416 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2793073 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 2944620 6631086 ~ 6631499 (-) True G422354
TU487077 other upstream 158234 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 574934 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 575347 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 612062 10192696 ~ 10192895 (-) True G424459
TU487810 other upstream 865843 10444355 ~ 10542665 (-) True G424808

Expression Profile