RNA id: CI01000304_09695997_09696577.mRNA



Basic Information


Item Value
RNA id CI01000304_09695997_09696577.mRNA
length 824
RNA type mRNA
GC content 0.40
exon number 3
gene id CI01000304_09695997_09696577
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9695997 ~ 9697143 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AACAAGACTCCAGAAAAGGGCAACAAGGGTGACAAGAAAGCACAGACGCCTAAAACACCACAGTCACCTAAAACGCCACAGACACCACGGGTTTTCACTGTCCCAGAGATCAAGGCCAAGATGATGGCAAGTGTAGAAAAGGGTGTATCGCTACCAAAACTACAGCCAAAGTTTGAGAACTATGTGAAGAACTGCTTCAAGGCCACTGATGCAAAGGTCATTGAGGAGCTCTGGAAGTGGAGACAGAGTGTCAAGTAGAAGAACTGAAACACTTTTTTATTTTGCTTAAATTATTAAGCCTTTTTTTCTTGCCCAAGATTTTAGTTTTTGTTACCCACAATTTTATGTTTGTTTGTCCCCATACCCTTCAGTTTTTATGTCAAATCCGTGCCATTCCTTGAATAGACTTTACTCAGAACATGACCTTTTTCATCCTTTGCAATCTGCCCTCTCCTCACCCCTGTGGTGTTGTCATGTCCATAGAGTGTGGCCTTCATTTGGCAGCCTTGTTGCTCAAATGACTTTCTGAGCAGAAGATTTCAACCTTCTAATTTATATGGAGATTTGTTGACTGTACCCGTCCATGATTTTAAAATGACATGGAAATATGTGCATTGTATTCTGATTAGAGATGCGACTGAGAAGTTGATTTATTGAAATCTTGAAACGCTTGACTTGGTTTGCGATGCATTAGTGGGTTTCAGAATGGTATCAATGATGAATAACATTATTTCAGCAGTGTGTTATTTTTGTAATTGTCCATACCCTGTAACATGCTAGAAGGTGGAATGTATTAAGTGTTTGGGTTTGATTAGTCAACTGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU486766 lncRNA upstream 34442 9661163 ~ 9661555 (+) True G423878
TU486765 lncRNA upstream 35153 9660434 ~ 9660844 (+) True G423877
TU486761 lncRNA upstream 35839 9659708 ~ 9660158 (+) True G423876
TU486726 lncRNA upstream 36725 9658246 ~ 9659272 (+) True G423842
TU486725 lncRNA upstream 86836 9579575 ~ 9609161 (+) True G423841
TU486780 lncRNA downstream 16918 9714061 ~ 9714287 (+) True G423892
TU487279 lncRNA downstream 365291 10062434 ~ 10062747 (+) True G424323
TU487282 lncRNA downstream 368952 10066095 ~ 10066360 (+) True G424326
TU487233 lncRNA downstream 418191 10115334 ~ 10115681 (+) True G424277
TU487179 lncRNA downstream 419200 10116343 ~ 10121444 (+) False G424246
CI01000304_09692774_09694613.mRNA mRNA upstream 1384 9692774 ~ 9694613 (+) True CI01000304_09692774_09694613
CI01000304_09683383_09690928.mRNA mRNA upstream 5056 9683383 ~ 9690941 (+) True CI01000304_09683383_09690928
CI01000304_09564068_09565679.mRNA mRNA upstream 130219 9561005 ~ 9565778 (+) False CI01000304_09564068_09565679
CI01000304_09532680_09535197.mRNA mRNA upstream 159566 9532680 ~ 9536431 (+) True CI01000304_09532680_09535197
CI01000304_09529802_09531061.mRNA mRNA upstream 164693 9529391 ~ 9531304 (+) True CI01000304_09529802_09531061
CI01000304_09757695_09760278.mRNA mRNA downstream 59950 9757093 ~ 9760699 (+) True CI01000304_09757695_09760278
CI01000304_09879900_09938234.mRNA mRNA downstream 182711 9879854 ~ 9939321 (+) True CI01000304_09879900_09938234
CI01000304_09961620_09975855.mRNA mRNA downstream 264477 9961620 ~ 9975870 (+) True CI01000304_09961620_09975855
CI01000304_09976509_10020020.mRNA mRNA downstream 279366 9976509 ~ 10020575 (+) True CI01000304_09976509_10020020
CI01000304_10093597_10099497.mRNA mRNA downstream 396454 10093597 ~ 10099497 (+) True CI01000304_10093597_10099497
TU486746 other upstream 130424 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU486477 other upstream 746575 8949036 ~ 8949422 (+) True G423614
TU486091 other upstream 1023442 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU485809 other upstream 1461037 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 1715262 7978628 ~ 7978814 (+) True G422786
TU487178 other downstream 423256 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 491679 10188822 ~ 10189404 (+) False G424251
TU487195 other downstream 492172 10189315 ~ 10189404 (+) True G424251
TU487556 other downstream 858143 10555614 ~ 10555704 (+) True G424559
TU488854 other downstream 2731562 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019

Expression Profile