RNA id: CI01000304_09726631_09727403.mRNA



Basic Information


Item Value
RNA id CI01000304_09726631_09727403.mRNA
length 4147
RNA type mRNA
GC content 0.36
exon number 3
gene id CI01000304_09726631_09727403
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9725947 ~ 9730308 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGAAAAAGGAAAGGTTGCACTAGAAGTACAAGTAAGTAAGTAATTTCTTATCTTTCCTCATTTTTTTCAGCATGTTAAATCAAATGTTTACACTCTGTTACAGTTGCACTCTGACTGTGGCTGTCTTTTCAAAAATTGAAAAGATGAGAATTTTTAGATATTTTTTAGAAATTGTTTTCCGAATTTTAAATGTTTCCTATTTTAAAATGTTTGTCTTCTATACTTGTATGCTAGATGCTATATTTATTTAATTTGTGTGTATTGGTAATTAGTCTATTTTCTTTTTGTAAATTACTTTGCAAACCTAGATACAAAACCAGGTCACACTATTGATAAGTTTGCACACTGATTATGGGTGAAATTCATAAGTCATTAAATCATCTGTATATGTTAACACTTTACAATAAGGTCCCATTAGTTAATGCTAGTTAATGCATTACCTATGTGTAATACATTTGTTACAGTATTGATTAATCTTTGTTAATGTTATACAAATACAACTGTTCATTGTTAGTTCTTGTGAGCTCAGGTCCATTAAATAATGTTAACAGATACAACATTTGATTTTAACTATAGTAAAAGTTGAAATTAACTGAGATTAATAAATGCTTTAGAAGTCTTTTTCATTGTTAGTTCATATTAATTAATGTAGTTAACTAATGTTAACTAATGAAACCTTATTGTAAAGTGTTACCTGAATATAAAAGAAACTGTCTTATTTTGTTTTTTAAAATGTACCCAGAGCTGCAGGCTGCAAAAAACTTTTCTTTTTCTTTTTTTTTTCTTTTTTTGTAAGATTAAAATAAAATCTTAAATTTCACAATGCTGCATTCCATATTTCTTTGAATTTAAACAATCTTTAACTAATTTATCTTCGAAAGATTTAGTGATTAAACATTTCTCTGATCATTACTCAAAATATTTGAGAAGTTATTAATAACAGACATTTGAGAATAAATGAAAATGTAACATCTTGCCACATAGCTGTTTTTGTGATAGTTCTTTGCTCTACATTCATATACATTTATTGTTCTTACAAGCTTTAAAGGAAAAACAAACAAACAAAACCCAGTGGAACCGGTTCATAGGAATATATATATATAGGCAAATTTTCAATTTTGAATATGAAACGAAACTCTACATGGATAGTTTGGTGAGACTTGCCAGACAGGGTCATTAAAGCAAACAGTTTCATTTTGAACAGTGTTGCAAAAGGTGACCTGAAAGTTTAGCAATGCAAACAAATTTTTTTTGAATAGTACCCAGCATGCATTGCTGTATGAAAAAAATAAAATGACTTCTATTAAAAGGATTAATAACCAATTAGAACTTCTTGCATTACTAAACCTCAATATGCCTCATTACATTATACAAAATTTTGTAACACTTTATTTTAAGGTGTCTTACAAAATTTACCCTTCGCCGGGAATTTGATTGGCAGGCAATCTGACCAATCATGACACTGAATTCGCCATTTTGTCTGACAAACAAACACAGGATAGTTAATAAATTAACGTTGTGGACTTGAACTTGGACTTGAAAAATGGTGTGTATTAATGTCTTTCTGTGGTTGAAAAAAACATACCTTCTAATGTTAATTCATCACTAGTAGGAAGAGATGACCGGTTCACATGCCGCTTGAACTGAGGCACTACAGCGATCTGTCACAACACATTAAAGAGCCAAAAAACAGTATTAATTTTTTGAATTTCTTAAAAAAATTACAAAATTTGAAAGCTGAGACTTTATTTCACACCATAAGTAACCTGCTTTGTCTTGTTTGTCAGCGCGTTGTCAGTGTCCTCTTTGCTCTGCGATGTATTTTTCACTTTGTGAGAACATGATATGTGGTGTGAGAGCGGCTTGTCGGACAAAGCAACAGTAACTAAGGACTCAAGGTGCAGGACAACAGGCATTTATTTGTTATAAAAAAAAAATAAAAAAATTAAACAAAAACCCTGTAGGGGAAAACACTGGCAGCAGGACCAGACAGGCAAGAGTGGAAATGGCAAGACAAGGCAGGACAAGACACGATGGGTAAATATGACAATGAACTGGCACAGGATTGAAAACACAAGGAGAATAAATAGGGAGCAAACAAAGCAGGCAACAAGGGAGGACAGGTGGGGCAAATGAATCAATAATCAGATAACAAGAAGGATGGGGTTAAGACAATAGACAGGAGAGCACATGGCACAAAGAAACAAACATGACAAGCCATGTGCTCACTCATACCAAACATGAACACGGAGACACTGAGAGCTCTCACTGACTGCATGTCCATACTGAACATGACAACAAGAAATCATGCGGCCGAAATAAACACAAACCGCTTGCTACACAGAACACAACACACACGCGGACAGAACAGCGTATGGCCCTAGCAAATTCAAAACTGCATGCTCAAGTCAACTGAAGACACAACAGAAGACAAACACACGGAGCATGAATGTCCGAACTCTGACACAGAACCAAAACCCAACTAGACCGAAATGTCGGGTTCTAAATACCACGCGCCACACACAAAGCAACTCGCATGGACAGAAGAGCGTACGGCCCGAGCGAACTCGGAAATTCTCACAATGACAGAAGGAGTGTCAGAGCTCTGTCACCAAACCAAGAATAAACAGACTGAAGAGACAGAACCCTAACATAGGGTTAGTTGCATGCAATGTGTAACGAAGGCTCTGTAAAATAAAGTGTTACCCAAAATTCTTTAAATTCTTAGCTTTATTTGAGTTGGGTCTACTCCAAAAATTGCTTGTAATAAGTTATTTTTTTAAAGTGAGGTCAGTGTGGGTTTTCAGTAAAATTCAGTTTACATGATAGTTTAAAATAACAACTAGGATCAGTAAAAACCTTTCCTTTTTTTGTCATTCTTCCATATCAGTAAGGTCAAATCGCTATGGCGGCTGTAATTGTGCAGCAGCCTTTCATCAAGACTCAGAGTAATGCCTGGACTTCAGGAATATGTGACTGTTGCCAGGACTTGAATTCTTGCTGCTATGCGTACTGGTGCTTTCCTTGCTTTACCTGCTCCACCACTGGGGAGTTTGGAGAGAGCACCTGTCTACCTCTGCTGGACATATTTGGCCCATGTCTCTTGGCTTCGTTTGGGATTGCAACATGTGTGCCGCCTGTGACTCTGGGAATGAGGGTGGCAGTTCGCTACAAATATGATATTGGGGGCAGTCTCTGCGAGGACATCATGGTGTCTTGCTGTTGCATCTGGTGTTCATGGTGTCAGTTGAGTAGAGAAATCAAAGCACGCAAACAAACCGTCACCATAGTGCAAACCGCACCTACCGTGTTTCAACCAATGCCCATGGCAACCACCACACAAGTTGTCTCTACACAGCAGTCGGTTGAGATGATTCGTGCGCAACCGGTAGCAGTTGCTCCTGCAATGCAGATGGCACCAATTCAGACTGGTCCACCTACAATCATAACAACTGTTAAATAGGATATAGATGCTTGTGACACACACACACACACACACACACACACACACACATGCTGGGTTTCCATGTTTTATGGGGATTTTCCATAGACATAATGATTTTTATTATTACCTTATTTGTGGGGACATTTTGTCCCCATAACGTAGGGTTTACCAGGACCACACACACACACACACATTAGATTTTTTTATCTTTGTGGGGACTCTCCATAGACGTAATGATTTTTATACTGTACAAATTGTATATTCTATCCCCCTATACTAAACCCACTCATCACAAAAAACTTTCTGCATTTTTTACAATTTCAAATAGGCATAACTTAGTATGTTTTTAAAAAAAAAAATGTTTTAATCTATTTCCCTTGTGGGGACCGCTGGCTGGTCCCCACAATGTAGGCGATCTCTGGTTTTATTATCCTTGTGTGAATATTTGGTCCCCATAATGTAGGTTAAATGTATACACACACACACACACACACACACACACACACACACAGACCGAATACTAAGTGATCCGTATAATATAATATCTAACCTGCTTAATATAAATGATTTTGTGTGAATGGCTTGGGTGCATTTGGAAAATACCTGTCTTTATATTGTTTATTCCTTGAATATACCTATGTAATCAGACTTATTTAATTTTTTTAATTATTCAAATAATAATAATAAAAACATCTGATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU487064 lncRNA downstream 28624 9695733 ~ 9697323 (-) True G424159
TU487078 lncRNA downstream 30568 9694525 ~ 9695379 (-) True G424169
TU487133 lncRNA downstream 34707 9676129 ~ 9691240 (-) True G424203
TU487127 lncRNA downstream 50860 9674873 ~ 9675087 (-) True G424202
TU487126 lncRNA downstream 53900 9671744 ~ 9672047 (-) True G424201
TU487147 lncRNA upstream 13260 9743568 ~ 9744018 (-) True G424217
TU487148 lncRNA upstream 13897 9744205 ~ 9744618 (-) True G424218
TU487170 lncRNA upstream 109799 9840107 ~ 9840527 (-) True G424239
TU487386 lncRNA upstream 246951 9977259 ~ 9977486 (-) True G424418
TU487416 lncRNA upstream 303286 10033594 ~ 10036068 (-) True G424448
CI01000304_09720695_09725068.mRNA mRNA downstream 879 9720276 ~ 9725068 (-) True CI01000304_09720695_09725068
CI01000304_09699524_09703985.mRNA mRNA downstream 19288 9699368 ~ 9706659 (-) True CI01000304_09699524_09703985
CI01000304_09622805_09640521.mRNA mRNA downstream 85407 9622376 ~ 9640540 (-) True CI01000304_09622805_09640521
CI01000304_09609674_09619712.mRNA mRNA downstream 105917 9609510 ~ 9620030 (-) True CI01000304_09609674_09619712
CI01000304_09577749_09578512.mRNA mRNA downstream 147435 9576119 ~ 9578512 (-) True CI01000304_09577749_09578512
CI01000304_09737662_09738777.mRNA mRNA upstream 6918 9737226 ~ 9738777 (-) False CI01000304_09737662_09738777
CI01000304_09751291_09754997.mRNA mRNA upstream 20613 9750921 ~ 9755245 (-) True CI01000304_09751291_09754997
CI01000304_09765626_09814386.mRNA mRNA upstream 35318 9765626 ~ 9814386 (-) True CI01000304_09765626_09814386
CI01000304_09944778_09945833.mRNA mRNA upstream 214315 9944623 ~ 9945833 (-) True CI01000304_09944778_09945833
CI01000304_09949821_09951564.mRNA mRNA upstream 218857 9949165 ~ 9953257 (-) True CI01000304_09949821_09951564
TU487066 other downstream 156913 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU486232 other downstream 860651 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 2073244 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2942901 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 3094448 6631086 ~ 6631499 (-) True G422354
TU487077 other upstream 6438 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 423138 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 423551 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 460266 10192696 ~ 10192895 (-) True G424459
TU487810 other upstream 714047 10444355 ~ 10542665 (-) True G424808

Expression Profile