RNA id: TCONS_00021917


Basic Information

Item Value
RNA id TCONS_00021917
length 687
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_009833
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19508738 ~ 19513991 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAAGTAACACTTTTAAGTAtctttatttaatgctgtcaccgtgctgctgtcatgtccgtCCACTGGCTGTTTTTGTCGCGgaagcaacagcgaggatgactggaggagagcCGGCTCGATCTGGTCAATGGCAGCAGGAGACACTGAGGATGGCGAATTCATTTGATGGTGCTAAAGGATCTAAACTGTTGATATTCGCAAGGACTGTGTAGCATCTTTCGGTGGGCTTTCTGGTAAGTGCCTGCTAAAATGGATAACAGACATTTTTAACATAAAcgtgaaatatttaataaatttcatACAAGACTTGTTTTGAGTATATAGGAGCATGCCATTGTTGCAGTAAAGAAGAGTGCCCAGTGTCTGCTGATCTAAGCACAGTTACAGTGGTTTTTTCAGTCTGTGACATCTAAATTCTCTTCTTGTCAACTGGGCACAAATTATAAGCCAAGAGACATCAGCTGACTGATTAAAAATAAGTGTCAGGCTATGGAAGGACAAAGGAATGTCTGTGAATAAAAACGAAAACAAAAATCAATACACCTCTCAAGTGAGCAGCATAGAAAGTATAAAACATACTTGAAGGACATCAACTATAACGCTGTTAAATACTAAATACAGTTTGAATTTATGATCattcagatattttaaaatgtttgcacaATCTAAGTCAGAATGAAATGTAG

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001707 mesoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0000307 cyclin-dependent protein kinase holoenzyme complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021915 lncRNA upstream 96317 19375634 ~ 19412421 (+) False XLOC_009831
TCONS_00021916 lncRNA upstream 96317 19375706 ~ 19412421 (+) True XLOC_009831
TCONS_00021705 lncRNA upstream 127446 19380866 ~ 19381292 (+) True XLOC_009832
TCONS_00021914 lncRNA upstream 356938 19131365 ~ 19151800 (+) True XLOC_009830
TCONS_00021913 lncRNA upstream 384328 19042881 ~ 19124410 (+) False XLOC_009830
TCONS_00019641 lncRNA downstream 172722 19686713 ~ 19715210 (+) True XLOC_009837
TCONS_00019645 lncRNA downstream 291030 19805021 ~ 19807133 (+) False XLOC_009840
TCONS_00021918 lncRNA downstream 291844 19805835 ~ 19808908 (+) False XLOC_009840
TCONS_00021706 lncRNA downstream 293093 19807084 ~ 19809073 (+) False XLOC_009840
TCONS_00021707 lncRNA downstream 293952 19807943 ~ 19809073 (+) False XLOC_009840
TCONS_00019628 mRNA upstream 356938 19029297 ~ 19151800 (+) False XLOC_009830
TCONS_00019629 mRNA upstream 358003 19033554 ~ 19150735 (+) False XLOC_009830
TCONS_00019627 mRNA upstream 421401 19029297 ~ 19087337 (+) False XLOC_009830
TCONS_00019626 mRNA upstream 485622 19014886 ~ 19023116 (+) True XLOC_009829
TCONS_00019625 mRNA upstream 490439 19013257 ~ 19018299 (+) False XLOC_009829
TCONS_00019632 mRNA downstream 22623 19536614 ~ 19538772 (+) False XLOC_009834
TCONS_00019633 mRNA downstream 22648 19536639 ~ 19538772 (+) False XLOC_009834
TCONS_00019634 mRNA downstream 22770 19536761 ~ 19537851 (+) False XLOC_009834
TCONS_00019635 mRNA downstream 23082 19537073 ~ 19538776 (+) True XLOC_009834
TCONS_00019636 mRNA downstream 123393 19637384 ~ 19646960 (+) False XLOC_009835
TCONS_00019630 other upstream 380267 19065345 ~ 19128471 (+) False XLOC_009830
TCONS_00019610 other upstream 1937804 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019609 other upstream 1991656 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019587 other upstream 3354280 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019585 other upstream 3641573 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019642 other downstream 190433 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019651 other downstream 653843 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019655 other downstream 782832 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019658 other downstream 982782 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019667 other downstream 1399422 20913413 ~ 20913484 (+) True XLOC_009854

Expression Profile

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