RNA id: CI01000304_10489464_10500854.mRNA


Basic Information

Item Value
RNA id CI01000304_10489464_10500854.mRNA
length 1767
RNA type mRNA
GC content 0.38
exon number 9
gene id CI01000304_10489464_10500854
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10489381 ~ 10501137 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTAAAAAGAAAACGAGTGCTGACTACATCTACAAAGAACAAGGAACAAAATCGTTTTATTTTTAAAGGTTAAAAAGAAGAAATGTCTGATGGTATTTATGACGATGTGGTCAGGACAGAGCCTGAGGGAATGAACAGAGAGCGAGTGGAGATGATGGTGGAAATCTATGAGGGTGCAGATTGTGTGAGAGATCATGACTTCAGGACAAACACACAAAGACCACTTCAGCATACAGTCATAGTGCTGTGTGTCCGCATCCATACAAACAGCACAAACTACACAGAAGAGACACACCAGTTACTAACTACAATTACCAACCTGACAGAGGAGAGAGACCAGCTAATAACCAAGATCAACAACCACACAGAAGAAAGAGTCCAGCTACTAACCAAGATTACTAACCTGACAGAAGAGAGAGACCAACTACTAAACAAGGACATAACCTTGACAAATGAAAGGGATGGATTAACCAAAAACAATTACCAGACTAAACAAAGAGACCAGTTCAATCAGGAGAGAAACGAACTGTGGAAGATGCTCAATGAAATGGATGGATTTATTTATCAGTCCAGTTTTTACTATATGTCTGCTGAAAAGAAGAGCTGGACTGATAGCAGAAGACACTGTACAGAGAGAGGAGCAGATCTGATCACCATAAACAACAGAGAGGAACAAGAGTTTGTTAAAACGATTTCTGGTAACACTGGAGTCTGGATTGGTCTGACTGACAGTGATGTGGAGGGCAGATGGAAATGGGTTGATGGCTCCAACATGACCTCTGGGTTGTGGATGTTTGGAGAACCAAATGGATATGGAAAAGAGAACTGTGTTGTGTTATATCCATCAGGGTGGTATGATTATCCATTCATAGTGCTGTGTGTCCAACTCTTTACAAACATCGACCTGTTTCAATTCAAGAGTAAAAACATCATGGAAGATAGAGAGCTACTAACAAAGATTACTAACCTGACAGAAGAGAGAGACAAGCTACTCAGCAAGAACACAAACTTGACAAATGAAAGGGATGCATTATTATCCAAGAATGACAACCTCACTAAACAAAGAGACCAGTTAAATCAAGAGAGAAATGAACTGGTGAAGACGCTTAATGAAACAGATGGATGGTTATACTACAAATTCAGTTTTTACTTAACTTCCTATGAGAAGAAGAACTGGACTGAGAGCAGAATATACTGTACAGAGAGAGGAGCAGATTTGATCATCATAAACAACACAGAGGAACAAGAGTTTGTTAACCAGATTTCCAGTCATAAAGAAATCTGGATTGGTCTAAATGAAGAGAACACATGGAAATGGGTTGATGGCACCAACATGACCTCTGGGTTCTGGGGTCCTCAGGAGCCAAATGGAGGTACAGCAGAGAACTGTGCTGTGTCTTTTTCATCAGGGTGGTATGATTATCAATGTAACTATGAATATAGATGGATCTGTGAGAAGAGCTTGGCAAAGTATCACATATAATGAAAAAAAAAAAAAAGTTTATTCAGCACATTTTTAACATGAATAGAGGATTTTCTCTCCTAAACCCCCAAACTTCTTTACATTCTTACATTTAATATGGTGTTTTGCATGTTACTAATGTTTTAAATCATCTTATCATTATTTTATTAAAGTTTAGTTACAGGTGTATTAATGTGTCACTCCACACTGGTCAATGTCAGTTCTGTAACAGCAGACAGTGTTTAAGTTTTTTTAAGAATCATATGTAGAGGATACAACCTCTTAAACTGAGTAGCATCCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487561 lncRNA upstream 28713 10459425 ~ 10460668 (+) True CI01000304_10451536_10470518
TU487340 lncRNA upstream 236109 10253047 ~ 10253272 (+) True G424376
TU487325 lncRNA upstream 246168 10242979 ~ 10243213 (+) True G424366
TU487310 lncRNA upstream 268266 10219120 ~ 10221115 (+) True G424351
TU487188 lncRNA upstream 272526 10153444 ~ 10216855 (+) True G424248
TU487534 lncRNA downstream 22124 10523261 ~ 10528247 (+) True G424546
TU487535 lncRNA downstream 22124 10523261 ~ 10525495 (+) False G424546
TU487537 lncRNA downstream 22124 10523261 ~ 10523469 (+) True G424546
TU487539 lncRNA downstream 31109 10532246 ~ 10535441 (+) True G424547
TU487538 lncRNA downstream 40332 10543664 ~ 10543770 (+) True G424547
CI01000304_10473174_10473651.mRNA mRNA upstream 15656 10472092 ~ 10473725 (+) True CI01000304_10473174_10473651
CI01000304_10451536_10470518.mRNA mRNA upstream 18126 10450410 ~ 10471255 (+) False CI01000304_10451536_10470518
CI01000304_10327313_10328936.mRNA mRNA upstream 159989 10327261 ~ 10329392 (+) True CI01000304_10327313_10328936
CI01000304_10316482_10319012.mRNA mRNA upstream 170364 10316308 ~ 10319017 (+) True CI01000304_10316482_10319012
CI01000304_10292429_10311478.mRNA mRNA upstream 177653 10292429 ~ 10311728 (+) True CI01000304_10292429_10311478
CI01000304_10504058_10505899.mRNA mRNA downstream 1851 10502988 ~ 10506016 (+) True CI01000304_10504058_10505899
CI01000304_10512196_10516865.mRNA mRNA downstream 10386 10511523 ~ 10516916 (+) True CI01000304_10512196_10516865
CI01000304_10528999_10530630.mRNA mRNA downstream 27355 10528492 ~ 10530847 (+) False CI01000304_10528999_10530630
CI01000304_10541900_10546151.mRNA mRNA downstream 38990 10540127 ~ 10546209 (+) False CI01000304_10541900_10546151
CI01000304_10550477_10551812.mRNA mRNA downstream 49131 10550268 ~ 10552740 (+) True CI01000304_10550477_10551812
TU487195 other upstream 296486 10189315 ~ 10189404 (+) True G424251
TU487194 other upstream 297583 10188822 ~ 10189404 (+) False G424251
TU487178 other upstream 362059 10120399 ~ 10127322 (+) True G424246
TU486746 other upstream 923808 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU486477 other upstream 1539959 8949036 ~ 8949422 (+) True G423614
TU487556 other downstream 54149 10555614 ~ 10555704 (+) True G424559
TU488854 other downstream 1927568 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other downstream 1927568 12436554 ~ 12436605 (+) True G425718
TU488852 other downstream 1936667 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU489575 other downstream 3055314 13556451 ~ 13573943 (+) True G426349

Expression Profile