RNA id: CI01000304_10812673_10812980.mRNA


Basic Information

Item Value
RNA id CI01000304_10812673_10812980.mRNA
length 2566
RNA type mRNA
GC content 0.41
exon number 2
gene id CI01000304_10812673_10812980
representative False

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10812533 ~ 10815238 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATCTCTCTTTCATATGAATGGTTGGTTAAATCATCATTTGCCTCTTTTAAGTTCTCCTCAGCTCAATGAATGAGATAAAACTGCTGCCACTGTGTGATATAAAATATATTACATAATATTAAGATCTGACATTTCATTTCCACTCAAGGGAGCATGTCTCGACAAGACCTACAAATACTGAGTGTGTGTGTGTTTAGTGGAGATCGGGGAAAGTTGTCACATGGGCTATATCTTAGTAAGGTTTTGAGCCAAATGTCCAATTACACAAATGGTTTCTTTAGCAGTCATTTTTTTCCCCTTCAAAGATCTAGTTCAAAACCCTGTTAAAGCTGCAGTCCGTAATTTTGCCTCTGTCGCCATCCCTGTTTGAAACCTGCAATTGCAGTCCGTAATTTTGCCTCTTTGTCGCCATCTCTGTTTGAAACCTGCAATTGCAGTTGTTTGCGGAATTATCATCTTTATATGTGCCTCGGCGCGGCTCCTAAGTGCGGATGAATCTAATGTTTGCTGCCAATCACCACATCGGTGTGGATTCTGTACTTCGGAATCACAGACTGTAGTCTTGGAAGTATGACCAAAATAAGAAGTTTCACCGGAGAATGTCGTCTGAACAAGTAAGAACACTTTTGTTCTGACCAACTGAGGGAAAAAAAGCATTACAGTAAATTGCGCTGCCAATGGTGATTAAATCTAATGATCACTTAGCTCATATCACGTCAAACTGTGCAAATTATTATTATTGTTATACTTTGTTCTCAAATTGTTAATGTTAACTACATCAGCATTGCGTATATGTATTTAGTGTGCTTTAGCCTAGCGTTACCTGTAGATTTCAATTTCTGTACACTCTAATCTCTAATGTTAATTTGTCATATCATACAATCCGCCATCAAAATAATAAGTTTAATTATTGCAGCTGCTCTGAGAAAAGGCTGTAAATAATCTGCGTCATATGCCATATAGCCTACTAGCTGGGACTCATCCTTTATGTATACAGACGTGACGCAATGACGCAAAGACAAACGGCTGCATGCTCGAATTTCCTGGTGAAACCCACCAGTACCACCCGAATTATAAAACATGATTACAAGCTTACCGTTGTGAATCGGGCTAAGGTAAGGAGATAGTTTTGAACACTGGCTGGTTATGTACCTGCTCAAAAATTGATTTTGGATCATTTTTAACCATAAAATGTTACGGACAGCAACAATTTGCATATTTAGGCAACGGTCAACTACATGATACTAGTGTGATTGTAACTTAAAACTTGAACTGTGCTTTCAGGACAGTTATTTTTTCAGTTATTTATATTTACTAATAGATTTTGGCAAAATAATAGCAATAATAATAATAATAATAATAATAATAAATATTTTTGTATGATACATACTGTACAATTTGGTGTATTATTTAAATGTTGATGTAAAGATAATGGCAGGATCAATTGTGGCAACTTACCCCTTAATGTGATTTATGATTTATTAAAAAGATGACAACAATTAAGCTGACTTCATATCAAACATATCGTTATTTTTTTTTCAGTGAAACCGGTAGGCAGTCATCTTTGCTGGATTGATAATGTACAGAATGACGACGATGCAATATTATCCGCCTAGTGGTTTGTATCAGTAGTAAAACTGTGTGCACAGTCATGTCTATTTGATCCCGGTGAGAGGTGCGCTGCTTGTAGATCCCACGGTAGCTGTCCATTCAGGACTGCTGTACAGTACGTGTAATGAAATCCACAAGAAAACGTGCCTAAATCATCATTAGCCCACCCATATCAGAATAATTTCATTACGCAATGCGTTACAACGAGACAGGGGACAATCAGTGCCATTGCACGCACTCGCATTATATTTCCCCGTTCTTTTAATCATACAGACTGTGGAGTCGAGAACCAGTTTGATCGAAGAATAATTCCAGGCGCGCGCTATTGGCTCCCCGTCCTCATCTGTCAATCTGCGGAGGCGGGACTCTGCCTGCTCGCGCTCCCAGGAGGCGATAGATGCGCGAGCTGTACTTTTCTACTGTGTTGGAGCGCTTCGCACTTCTCGAGCTCAGTCCGAGCGTCAATTGAACGGCGTGCGGAAAGCGCAGTGGGACTTCAACCGAGGAGAAGTTATCGAAGGAGCCTGTAGTATTGATTGCAGCAGTCTGCACCTGGATAAGCCCCCATCATCAGCGCGCGGAGAAGCGAAAGAGCGAAGAAAGTGTGTTGACGGCAAGCGGGCAGCTGTTATAGAAGGAAGGCAATATGATGGTGAAGCAGCATATGCTGTTTACCCTGTACAGCATCTGCGGGATCGTCCTTAAAGGGCCTCGAGTGAGTACGGGGAACAGTTTCCCGTTAGTCATCATTGCTCTGAAGGAATTGTGCGGTGCACGTTTGCCCAACACTGATACAGAATCTTATCACGGATAAGCCTGCACACACTGCTGAGCTAGAGCCCCGCTTGTATGGATTACCAGTCAAAATGTGTTATAGACAAACTCATCACCATAGAGGGAATATGATTTAATTGATACAGCCTTTGCATAACCTGATCGGAAACTTTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487899 lncRNA downstream 27276 10778756 ~ 10785257 (-) True G424892
TU487898 lncRNA downstream 88625 10713964 ~ 10723908 (-) True G424891
TU487808 lncRNA downstream 232521 10565628 ~ 10580012 (-) True G424806
TU487815 lncRNA downstream 247801 10452461 ~ 10564732 (-) True G424813
TU487812 lncRNA downstream 251151 10547680 ~ 10561382 (-) True G424810
TU487914 lncRNA upstream 33963 10849201 ~ 10849483 (-) True G424907
TU487939 lncRNA upstream 83869 10899107 ~ 10899901 (-) True G424932
TU488143 lncRNA upstream 119143 10934381 ~ 11001594 (-) True G425104
TU488168 lncRNA upstream 322139 11137377 ~ 11137710 (-) True G425126
TU488209 lncRNA upstream 324676 11139914 ~ 11140117 (-) True G425167
CI01000304_10350748_10388571.mRNA mRNA downstream 423931 10349869 ~ 10388602 (-) True CI01000304_10350748_10388571
CI01000304_10284509_10291314.mRNA mRNA downstream 521219 10284509 ~ 10291314 (-) True CI01000304_10284509_10291314
CI01000304_10220812_10226103.mRNA mRNA downstream 586430 10219589 ~ 10226103 (-) True CI01000304_10220812_10226103
CI01000304_10209150_10210418.mRNA mRNA downstream 601642 10208635 ~ 10210891 (-) True CI01000304_10209150_10210418
CI01000304_10191594_10192287.mRNA mRNA downstream 620176 10191398 ~ 10192357 (-) False CI01000304_10191594_10192287
CI01000304_11065581_11077156.mRNA mRNA upstream 250001 11065239 ~ 11077156 (-) True CI01000304_11065581_11077156
CI01000304_11083948_11091592.mRNA mRNA upstream 268600 11083838 ~ 11091592 (-) True CI01000304_11083948_11091592
CI01000304_11110559_11121354.mRNA mRNA upstream 295225 11110463 ~ 11122171 (-) True CI01000304_11110559_11121354
CI01000304_11124801_11135838.mRNA mRNA upstream 308919 11124157 ~ 11137342 (-) True CI01000304_11124801_11135838
CI01000304_11272501_11275583.mRNA mRNA upstream 456986 11272224 ~ 11275583 (-) True CI01000304_11272501_11275583
TU487810 other downstream 269868 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 619638 10192696 ~ 10192895 (-) True G424459
TU487428 other downstream 648203 10153446 ~ 10164330 (-) False G424458
TU487429 other downstream 648203 10153859 ~ 10164330 (-) True G424458
TU487077 other downstream 1073062 9739353 ~ 9739471 (-) True G424168
TU488239 other upstream 531782 11354883 ~ 11357146 (-) False G425194
TU488240 other upstream 531782 11354883 ~ 11357146 (-) True G425194
TU488688 other upstream 1053439 11868677 ~ 11872906 (-) True G425580
TU489285 other upstream 1521463 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 1743616 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998

Expression Profile