RNA id: TU488240


Basic Information

Item Value
RNA id TU488240
length 391
RNA type TUCP
GC content 0.58
exon number 2
gene id G425194
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11354883 ~ 11357146 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTGCCTGTCGGCGGGGAGGAGATCACAGACTCGGGCTATAGTAGGGTGTGGACGCTGGAAGAGTGTCGGTCCGGACTGTCCTAGTCATTACCGTTGGTCCACTCCAGCTGAAAGCGGCCACATAAACAGCACAGACACCAGCACTTGCCCTGAGGCTGAGAAGAGACTGTCTCAACGCACGATTCCCCTGGCTGGATGTTCTGTCAGCCCTCGCCTGTCATCTTCAGTGTACAGCTGCATCAGACGCCTCTCCTAGGCGTCTCCCAGATTCGGGTAGTGTGAGAGGAGAGAGAGTGCCGAGATGGATGACATCTTCACTCAGTGCCGTGAAGGCAACGCGGTAGCTGTCCGCCTCTGGTTGGACAACACAGAAAATGACCTAAACCAGGGGGATGACCACGGGTTCAGTCCGTTGCACTGGGCGTGCCGTGAGGGTCGTTCGGGCGTCGTGGATATGCTCATCATGAGAGGGGCGCGCATCAATGTCATGAACCGCGGCGACGACACACCCCTGCACCTGGCTGCCAGCCACGGGCACCGTGACATTCTGGCCAAGCTGATCCAGTGTAAAGCAGATACCAATGCGGCAAACGAGCACGGCAACACCCCTCTCCATTATGCTTGCTTCTGGGCCCATGACCTGGTAGCTGAGG

Function

GO:

id name namespace
GO:0010667 negative regulation of cardiac muscle cell apoptotic process biological_process

KEGG:

id description
K06272 ILK; integrin-linked kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488258 lncRNA downstream 65816 11280976 ~ 11281204 (-) True G425204
TU488285 lncRNA downstream 76532 11269185 ~ 11270488 (-) True G425230
TU488284 lncRNA downstream 78571 11268197 ~ 11268449 (-) True G425229
TU488283 lncRNA downstream 79923 11266326 ~ 11267097 (-) True G425228
TU488231 lncRNA downstream 96809 11245182 ~ 11250211 (-) True G425187
TU488328 lncRNA upstream 72471 11429617 ~ 11430150 (-) True G425269
TU488564 lncRNA upstream 90481 11447627 ~ 11447954 (-) True G425479
TU488617 lncRNA upstream 222085 11579231 ~ 11579432 (-) True G425517
TU488636 lncRNA upstream 241743 11598889 ~ 11599266 (-) True G425533
TU488666 lncRNA upstream 315216 11672362 ~ 11672698 (-) True G425559
CI01000304_11330383_11335607.mRNA mRNA downstream 10900 11329642 ~ 11336120 (-) True CI01000304_11330383_11335607
CI01000304_11304660_11306789.mRNA mRNA downstream 40149 11304560 ~ 11306871 (-) True CI01000304_11304660_11306789
CI01000304_11282245_11288087.mRNA mRNA downstream 58933 11282141 ~ 11288087 (-) True CI01000304_11282245_11288087
CI01000304_11272501_11275583.mRNA mRNA downstream 71437 11272224 ~ 11275583 (-) True CI01000304_11272501_11275583
CI01000304_11124801_11135838.mRNA mRNA downstream 209678 11124157 ~ 11137342 (-) True CI01000304_11124801_11135838
CI01000304_11359135_11362408.mRNA mRNA upstream 1771 11358917 ~ 11362408 (-) True CI01000304_11359135_11362408
CI01000304_11368905_11374145.mRNA mRNA upstream 11713 11368859 ~ 11374145 (-) True CI01000304_11368905_11374145
CI01000304_11445002_11447156.mRNA mRNA upstream 86585 11443731 ~ 11447156 (-) True CI01000304_11445002_11447156
CI01000304_11479874_11503083.mRNA mRNA upstream 122524 11479670 ~ 11503494 (-) True CI01000304_11479874_11503083
CI01000304_11526057_11569114.mRNA mRNA upstream 168853 11525999 ~ 11569114 (-) True CI01000304_11526057_11569114
TU487810 other downstream 804355 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 1154125 10192696 ~ 10192895 (-) True G424459
TU487428 other downstream 1182690 10153446 ~ 10164330 (-) False G424458
TU487429 other downstream 1182690 10153859 ~ 10164330 (-) True G424458
TU487077 other downstream 1607549 9739353 ~ 9739471 (-) True G424168
TU488688 other upstream 511531 11868677 ~ 11872906 (-) True G425580
TU489285 other upstream 979555 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 1201708 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other upstream 1201876 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489350 other upstream 1338852 12719497 ~ 12805926 (-) True G426147

Expression Profile