RNA id: TCONS_00019637


Basic Information

Item Value
RNA id TCONS_00019637
length 2810
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_009835
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19637384 ~ 19677375 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGAGTCTAATTATAATCATGAAAAGGATTGTTTGACTGCATTGTACTACGTATCCCAGTGTGCACTTCTTCTATTCAAGCAGACAGAGGCACACAGAAGTTTAGGTGAACAGTTGTGACACTCCTCCCCGACGTTTAAAAAGTTCGCTGAAAGACTGAGTAGAGAAACCACCATGCTCAAGCTTTGACATTAGAGACAGATTGTTGTCTTATTTGATATTGGAAATACGAAATGGCAGCTGCAAAGATAAAGTCAAACAGTCATCCAGCAAATCTGCTTCGGAGTAGATCAGAGGGGACGCTGATCGATATTGATGAGAATGTGACcattaacaacaacaacctaCATGGGGGCTGTGGTTATGAGATTGGAAAGACCTCTGAGTGGCCAGTCAtacaaaaagaaattgaaaatcCAAAACAAACCACCAACCCCTTCTGGAATCAGCTGGGCAGGTCAAATCCATTCTTAAATGAAATTGTGCACACCAGCAACTACGATTCTGGAGTGTCCATGATGAAAGAGGATCCTGCATCTCTGTTTGACAGTATTAACGAAGACTCTCTTAGCACATCATCAGATGAAACAAACTTTGCTCATCTTTTAGCACCAAGACAAAACAATTTAAACCGATCTGGTAGGTGGAGAAGTGCCTCGGATATACTTGAAAGCCTTGAGAAAAAGGAAGACAAGAGAGCAGTAAAACTCAGCTCTAAAGAATCCTTTTTGAATCCTGATTTTGAGTGGTTGAAGAATGACCGGGAAGCTTATAAAATGGCTTGGTTGAGTCATAGGCAACTAACAAGGTCCTGTTTGGACCTGAGCCTAATGAAGCAAAGTCCTGGATGGGCCCAGACTCAGGCCACAGACATTCAAATCTTCTGCAAGATTGACCACAACGGAGGCTCTGTGCAGTTGCCAGAATCTGACATCACTGCTCATATTCCCCATGGACATGTCCCTCCAGGCGAGGTCCAAGATATTGCCCTGAAAGTTCACCTTGATCCTCCTCCTGGAATAAACAACAACTACACCACAACTCTGAGTCCTCTTTTAGAGGTCAAGCTTAGCAACAGCAATATTTCAGGGGGCATTTCAGTAGAGATGAGAATGGCTGCTAAAGTTAAAAATGACCCCACAAGCCACGTCTTGACTTCATTCATGGGTCTAGTCTCTCAAAGAAAAGAGGGACCTTATCAGAAGATAAAAGACTGCTACATATACAATGACATGTTACAGATGAAACTCTTTGATTTGAAACCGCACATGTATGTTATAACTGCTGCAGAGGCCACTGTTTTGGAGTCACCTGCAGTGTCAGTATGGGATTACTTGGATCGCCAAATCACAGTGGCTGTCTATGGTCCCAAGCACATACACCCTTCACTCAAAGTGGTGCTGGTAATAATGAGCCATAATAATATAGCCCCCAGGCTCCCTTTCTCTGACATTCAGAGGGGTAACAGGAACCTGCCCCCTGTTGTCTTAGAGCTTTGGGGAAGGCATCAATTTAATCCACAAGGGCTAAAGGATCTTCACATTGTATCTAGAGTGTTGGATCTAAACTTTGAAGTTAAACCAGAGGATcaaaataaagagattaagcagAAACAGCTTGAAGATGGAAAAGTCCATCATCTGCCATTAGATCTGGTCAAGGTGGGTGGAGGTGAAATGAGTGCCTTCAAACTCAGCATTGAGGTGAAAGATTCAAACAGCCTCACTTTGGGAGACTTCTATGTTGCGTCTCCTGAGGCTGCTCCTTTGAGGTCAGAAAAATACAACCACAGACGAGTAGATTGGCAGAAGGAAGCAATTCGTTCCTCCCCAATTCCTGAAGAATCTATTCCAGAGATCTTAAGCCAGAAGTTTCAGGACAGACCTGTAGATTTGCATTGGTATGGGGTAGCAATGAAATCGGTTCTCAGACAACCGAGGGTGGAATATCTTCTGGAATACTTTAAAGGTGATACAATTGCTTTGCTTTCAAAGGAAACTGTTAGATCTGTAGGTCACATGAAGGTTAAGGAATGGTACATTGGTTTTCTTCGAGGAAGAGTTGGGTTGGTACACTGCAAGAACCTGAAGATCATAACCAAGGACCAAGTCATCGATTTTACTGGAATACATCTCACCACACCAGTGCTCTTGGACAATATGACAGTTCCTTTTAAAAAACTCACTTACATGTACTCTGCTATTCAGACCCTGGTCACAGAGCATGTCAAATGCTGGAGAAATTTCGCTGAGGCTCTTGGTTACTCTGAGGTCTCGGTTGATGCCATCTCAAGGAGGCACGCTGAAACAGAGGCAGAAAAAGTGGCCTGTGTTTTAGAAAAGCTCAAAGAAGACTGTCATGCAGAGAAGAACAAGAAAAAGTTCCAGCATGAACTTATCATTGGTCTGTTAAAGATGGATGCTCAAGGGCTAGTAGCTCATCTCATTCAGGATATAGTGATTCTGTCCACAGCTGTTGAGCTGGGAGTGCGATGGCGGGAACTTGCTGAGCGACTTGGGAAGATTTCCAGTGCCCAGATAGCTGTTTATGAGGCACCACACAAAGGGAAAAATGGAGAAGTTAGTACTCAGTCAATGTGGAAGCCTGCATATGACTTCCTGTTTGCCTGGAGTAAGAGGTATGGGGACAGCTACAGGGATATGATCCAGGACCTACACTTGGCACTGGATAAAATGAAAAGCCCAGTGACCAAGCAGTGGAGACAGATTACTGGAGCTCTCATCACTATTAACTCCATGGAGGTACTACGAACATATGCCTTCAACAGAGggcacgggttgctgttttga

Function

GO:

id name namespace
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-091006-3 Acts upstream of or within embryonic cranial skeleton morphogenesis. Predicted to be active in cytoplasm. Is expressed in eye; midbrain hindbrain boundary; otic vesicle; stomodeum; and telencephalon. Orthologous to human MACC1 (MET transcriptional regulator MACC1).

Ensembl:

ensembl_id ENSDART00000191895

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021917 lncRNA upstream 123393 19508738 ~ 19513991 (+) True XLOC_009833
TCONS_00021915 lncRNA upstream 224963 19375634 ~ 19412421 (+) False XLOC_009831
TCONS_00021916 lncRNA upstream 224963 19375706 ~ 19412421 (+) True XLOC_009831
TCONS_00021705 lncRNA upstream 256092 19380866 ~ 19381292 (+) True XLOC_009832
TCONS_00021914 lncRNA upstream 485584 19131365 ~ 19151800 (+) True XLOC_009830
TCONS_00019641 lncRNA downstream 27971 19686713 ~ 19715210 (+) True XLOC_009837
TCONS_00019645 lncRNA downstream 146279 19805021 ~ 19807133 (+) False XLOC_009840
TCONS_00021918 lncRNA downstream 147093 19805835 ~ 19808908 (+) False XLOC_009840
TCONS_00021706 lncRNA downstream 148342 19807084 ~ 19809073 (+) False XLOC_009840
TCONS_00021707 lncRNA downstream 149201 19807943 ~ 19809073 (+) False XLOC_009840
TCONS_00019635 mRNA upstream 98608 19537073 ~ 19538776 (+) True XLOC_009834
TCONS_00019632 mRNA upstream 98612 19536614 ~ 19538772 (+) False XLOC_009834
TCONS_00019633 mRNA upstream 98612 19536639 ~ 19538772 (+) False XLOC_009834
TCONS_00019634 mRNA upstream 99533 19536761 ~ 19537851 (+) False XLOC_009834
TCONS_00019629 mRNA upstream 486649 19033554 ~ 19150735 (+) False XLOC_009830
TCONS_00019640 mRNA downstream 18742 19677484 ~ 19681282 (+) True XLOC_009836
TCONS_00019643 mRNA downstream 73801 19732543 ~ 19734008 (+) False XLOC_009839
TCONS_00019644 mRNA downstream 73801 19732543 ~ 19734149 (+) True XLOC_009839
TCONS_00019647 mRNA downstream 397136 20055878 ~ 20151747 (+) False XLOC_009841
TCONS_00019648 mRNA downstream 397288 20056030 ~ 20154859 (+) True XLOC_009841
TCONS_00019630 other upstream 508913 19065345 ~ 19128471 (+) False XLOC_009830
TCONS_00019610 other upstream 2066450 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019609 other upstream 2120302 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019587 other upstream 3482926 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019585 other upstream 3770219 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019642 other downstream 45682 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019651 other downstream 509092 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019655 other downstream 638081 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019658 other downstream 838031 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019667 other downstream 1254671 20913413 ~ 20913484 (+) True XLOC_009854

Expression Profile

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