RNA id: CI01000304_11445002_11447156.mRNA


Basic Information

Item Value
RNA id CI01000304_11445002_11447156.mRNA
length 2422
RNA type mRNA
GC content 0.39
exon number 6
gene id CI01000304_11445002_11447156
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11443731 ~ 11447156 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTCTCTGGTGTTAAAAGTCAGACAGACAAAGACAAGCAGAACAGCCAAACTAAACAGAGCTACACAGAGAGAGCCTTTAGCATTACGATGAAAAAAGCAGAAACGCAGCAGAGACGGGCAGAGCTGAATGACAGAAAGAACATTCAACATTATCACAGAATAATAGCAGAAATGTCTGATGGTATTTATGACAATGTGATCAGGACTGAGTCTGCGGGAATGAACAGAGAGAGAGTTGAGATGACGGTGGAAATCTATGAGAGTGCAGATTGTGTGAGAGATCATGACTTCAGGACAGAGACAAACACACACCAACCACTTCAGCGTACAGGAAGTGATCGTGTGAAGATCAGAAGCTCCAGAGCAGCTCCAGTGTGTTTGGTGCTGCTGTGTGTTCTTCTGCTGACTGCAGTCATAGTGCTGTGTGTCTACATCCATACAAAGAGCACAAAAGAGAGAGATCTACTAACCAAGATTACCAGCCTCACAGAAGAGAGAGACCAGCTACTAAACAAGATTACCAACCTCACAGAAGAGAGAGATCAGCTACTAACCAAGAATACCAACCTCACAGAAGACAGAGATCAGCTACTAACCAAGACTACCAACCTCACAGAAGAGAGAGATCAGCTACAAATCACAATCAAAACTTTCAAAACAGAGAAAGATCAGATAGAGATCAAGAACCAAAAACTGACAAATAAAATAAAAGAGTTATCCAAGAATGATGATCTAATAAAACATCTTCATGAAAAGGATGTATGGATTTACTATCAATCTAGTTTTTACTACATTTCATCTGAGAAGAAGAGCTGGACTGAGAGCAGAAAATACTGTACAGAGAGAGGAGCAGATCTGATCATCATAAACAACAAAGAGGAACAAGATTTTGTTAAGAAAATGTCTGATGGTGTTAAAGTCTGGATTGGTCTGACTGACAGTGATGTGGAGGACACATGGAAATGGGTTGATGACACCTACTTGACCTCTAAGTTCTGGAAGTCTGGAGAGCCAAATGGACGTACACGAGAGAACTGTGTTCTTCTAACTGAATCATCAGGATGGACTTATTCATCAGGATGGGCTGATTATCCATGTCATGGTCATTATCAATGGATCTGTGAGAAAACCATTAAAACAAGTCATTAAATCACATACTTGTTTATGATGTAAATTACGAACAGACAAAAAGGTCTTTCTCTCTTTAAGACAATCTGAAAAAGTGAAAGTGAAAGTGACGAGACATGTAGCTAAGTATGGTGTCCAGTACTTGGAAGTTGTGCTCTGCATTTAAGCCATCCAAGTGCACACACACAGCAGTGAGCAAACACATACACACACCGTGAACACACACTCGGAGCAGTGGGCAGCCAATTTTTGCTGCAGCGCCCGGCGAGCAGTCGGGGGTTCGGTGCCTTGCTCAAGGGTCTCACCTTAGTCGTGGTATTGAGGGTAGAAGAGAGTTCTGTATATTCACTCCCCCCACGTCAATTCCTGCCAGTACTGAGACTCAAACTGCAATTATTATAATGCATTTTAACTTTGGTTACAATTATTTATTAAAAGATGTATTGCATTATAATATAATGCATTATACAGAAAGGCTTTAAGTAAAGTTTTACCATAAATTTTACTGAGGAAGACTCAAACCTGCAACCTTGGGTTACAAGTCCAACTCTCTAACCATTAGCCCACAACTACCCCACAAAATATATACACACATAGGTTCTCTTCCTCAGTAAAAATTATGGCAACACTTTACTGAAAGCGTTTATGTATAATGCATTATAAAAGTGTTCATAATGTGTTATAATGCATTATAACTTTTCATAATAGTAACTGCATTATAATAATTGCAGATTCCTTGTTCTGAAATTGTTTGGTTGTGATGTGTTTTAATCCATTATAGATTCCAAAGGTGTACCAAAAGTATTAAAATGTATTATAACTGTGGTTAAAAATTATTCATGAGATCATACAATGCATTATAAGGTGCTGTTTGAGTGTCTGTATCTGATGGTGTCCATCAATGTGTCTAATACAGAGGAAGTAGAATACTGTGATCATTTAACATTTAATCCTTTAGAAGATGTTTTTTTTTCTGGGAAGACCCTGTAAATTTGAGCAATTTTAGTCTATGGAACACAAACTAGCACAAGTAAGCATAAAAGAGCAAGTGTTGGAGTAGTTTACAGGTGTTTGTCTGCATCTGTGTTACTGATGAGAGTATAGAGACTCATTCCGAACTTCATGTCTGTTTGTCATCAGGAAGTGATTCTGAAAGATGGTGCTGCACTTTATACATCTTTCTTAATTCAGACACTTCCTCCTGTAGCTGCTTCAGTATCTTCATCCACTCTGCCTCTCTTTTAACATTTAACACTTGCTTTACCCAGTGCTGTCATTCATAATCTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488328 lncRNA downstream 13581 11429617 ~ 11430150 (-) True G425269
TU488258 lncRNA downstream 162527 11280976 ~ 11281204 (-) True G425204
TU488285 lncRNA downstream 173243 11269185 ~ 11270488 (-) True G425230
TU488284 lncRNA downstream 175282 11268197 ~ 11268449 (-) True G425229
TU488283 lncRNA downstream 176634 11266326 ~ 11267097 (-) True G425228
TU488564 lncRNA upstream 471 11447627 ~ 11447954 (-) True G425479
TU488617 lncRNA upstream 132075 11579231 ~ 11579432 (-) True G425517
TU488636 lncRNA upstream 151733 11598889 ~ 11599266 (-) True G425533
TU488666 lncRNA upstream 225206 11672362 ~ 11672698 (-) True G425559
TU488655 lncRNA upstream 249438 11696594 ~ 11698398 (-) True G425549
CI01000304_11368905_11374145.mRNA mRNA downstream 69586 11368859 ~ 11374145 (-) True CI01000304_11368905_11374145
CI01000304_11359135_11362408.mRNA mRNA downstream 81323 11358917 ~ 11362408 (-) True CI01000304_11359135_11362408
CI01000304_11338304_11348212.mRNA mRNA downstream 95519 11338019 ~ 11348212 (-) False CI01000304_11338304_11348212
CI01000304_11330383_11335607.mRNA mRNA downstream 107611 11329642 ~ 11336120 (-) True CI01000304_11330383_11335607
CI01000304_11304660_11306789.mRNA mRNA downstream 136860 11304560 ~ 11306871 (-) True CI01000304_11304660_11306789
CI01000304_11479874_11503083.mRNA mRNA upstream 32514 11479670 ~ 11503494 (-) True CI01000304_11479874_11503083
CI01000304_11526057_11569114.mRNA mRNA upstream 78843 11525999 ~ 11569114 (-) True CI01000304_11526057_11569114
CI01000304_11575414_11578638.mRNA mRNA upstream 128172 11575328 ~ 11578638 (-) True CI01000304_11575414_11578638
CI01000304_11638983_11647850.mRNA mRNA upstream 191257 11638413 ~ 11649085 (-) True CI01000304_11638983_11647850
CI01000304_11654405_11655792.mRNA mRNA upstream 206779 11653935 ~ 11656016 (-) True CI01000304_11654405_11655792
TU488239 other downstream 86585 11354883 ~ 11357146 (-) False G425194
TU488240 other downstream 86585 11354883 ~ 11357146 (-) True G425194
TU487810 other downstream 901066 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 1250836 10192696 ~ 10192895 (-) True G424459
TU487429 other downstream 1279401 10153859 ~ 10164330 (-) True G424458
TU488688 other upstream 421521 11868677 ~ 11872906 (-) True G425580
TU489285 other upstream 889545 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 1111698 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other upstream 1111866 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489350 other upstream 1248842 12719497 ~ 12805926 (-) True G426147

Expression Profile