RNA id: CI01000304_11449463_11453214.mRNA



Basic Information


Item Value
RNA id CI01000304_11449463_11453214.mRNA
length 1210
RNA type mRNA
GC content 0.45
exon number 5
gene id CI01000304_11449463_11453214
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11448966 ~ 11453315 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATTTATACTGCGTTAGAGAATTTAATTCACACTTTATACAGACACACATACACAAACTGAGATGTGAATTACTGGTATGAATTACTATGCAGTACTTAAAACAAACAGAATAAATCTATGTCGGTAAGAAAGAACTTCTCTTTTAGTCAGAATTGTGTCTGAGCTATGGCTCAGAGATATACTGGTAGACCATTGTCGAATAACTCATATGAGTTTTGTAATATTATCTCTGTTGCGGTTTTGCTCATGTGGCATGCAATGTTGTGTTGCAAAACTTTTCATACATTTTTAGGCCTTGTCATGTAACATTTACTATTGTTCAGCAAAAGTCAGACATTTAAAAAGGAATCTACGTGTTTGTGACTTTCACGTGAGAGCAGAAAATTCCCCATGCAGATTTCGCAATGCATTCTATAGGCAACGCATTTAATGGAACTAGCTGAAGGGTCAGGTTAAGATGAGATTAATAGTGAGAGGAGCGATAGCGTTCGGTGGATGGGCATTGATGTTGTGGAGAATAGACAGAACGCAGATCTAGTTTGGGGGAGAGAGTTAGGAGGGAGAAGGGCCAAGGCTGAGGATGTTTGTGGAGGCAGCCTCATGCTTGGGACCTGGGGAGGAACAGGGAGGGCTACAGACAGGGGAGAGGGGAGAGGGTTAGAAACAACAGAAGGAAGAAGCTGTGACGTCTGGGCCTCTGCTGCTAATGGAGGCATCCTCACGCTAGAGTCTGCTGTTGGAGCTGGAGGCCACAGTGAAGCTATGCGAAAAATTCAACCTGGGACAGGACACAAGAAGGATTTGAGCTGTGCTCTTGTGGGGCTGAGCAGACGGGTGGAGAGGATGACTAAATGGGCTGGAGTCGAGAAAGACACGGAGGAAGATGGCGAATGTCTAGCTGGCGGGGCCAGGTCTTCTCCAGGTGTTGGTCTGCCTTTTAGCAGGTCGTATCCTGTGAACAGCCACCTGTGGGTCACAAAGCAGCTCTCTCTGGTCCATCCCCACCATCTGCCCGACACACCAACATACACACCTGCACACACATATGCCAACATGACACCTCATGAATACAGAGTATGTGACACCATTATTTTCTGTGTTCAGTGACCGTAAAATATAGTTTGAAATGTTGTAGCTCAACAACACCAAAGCTGTGTGTTCAAATTCTCATACTAGCAAAGTATTTATACACTGATAATTTCAGTACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU488337 lncRNA upstream 2593 11435670 ~ 11446373 (+) True G425277
TU488332 lncRNA upstream 15925 11432780 ~ 11433041 (+) True G425273
TU488064 lncRNA upstream 93837 11347279 ~ 11355129 (+) True G425036
TU488079 lncRNA upstream 98902 11348053 ~ 11350064 (+) True G425049
TU488056 lncRNA upstream 110522 11329668 ~ 11338444 (+) True G425030
TU488354 lncRNA downstream 16451 11469766 ~ 11470005 (+) True G425294
TU488376 lncRNA downstream 59174 11512489 ~ 11512701 (+) True G425316
TU488377 lncRNA downstream 61457 11514772 ~ 11526899 (+) True G425317
TU488403 lncRNA downstream 112639 11565954 ~ 11569871 (+) True G425338
TU488422 lncRNA downstream 167791 11621106 ~ 11621440 (+) True G425354
CI01000304_11323923_11325889.mRNA mRNA upstream 123061 11323495 ~ 11325905 (+) False CI01000304_11323923_11325889
CI01000304_11318496_11322260.mRNA mRNA upstream 126477 11318436 ~ 11322489 (+) False CI01000304_11318496_11322260
CI01000304_11308263_11317998.mRNA mRNA upstream 130903 11307048 ~ 11318063 (+) True CI01000304_11308263_11317998
CI01000304_11301321_11304134.mRNA mRNA upstream 144534 11300878 ~ 11304432 (+) True CI01000304_11301321_11304134
CI01000304_11288992_11297645.mRNA mRNA upstream 150817 11288992 ~ 11298149 (+) True CI01000304_11288992_11297645
CI01000304_11570457_11574856.mRNA mRNA downstream 117142 11570457 ~ 11575290 (+) True CI01000304_11570457_11574856
CI01000304_11582257_11610398.mRNA mRNA downstream 128493 11581808 ~ 11610611 (+) True CI01000304_11582257_11610398
CI01000304_11613446_11620345.mRNA mRNA downstream 160131 11613446 ~ 11620563 (+) True CI01000304_11613446_11620345
CI01000304_11676155_11681977.mRNA mRNA downstream 222840 11676155 ~ 11683131 (+) True CI01000304_11676155_11681977
CI01000304_11685224_11691071.mRNA mRNA downstream 231909 11685224 ~ 11691071 (+) True CI01000304_11685224_11691071
TU487556 other upstream 893262 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 1256071 10189315 ~ 10189404 (+) True G424251
TU487194 other upstream 1257168 10188822 ~ 10189404 (+) False G424251
TU487178 other upstream 1321644 10120399 ~ 10127322 (+) True G424246
TU486746 other upstream 1883393 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU488854 other downstream 975390 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other downstream 975390 12436554 ~ 12436605 (+) True G425718
TU488852 other downstream 984489 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU489575 other downstream 2103136 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 2876733 14330048 ~ 14330886 (+) True G426312

Expression Profile