RNA id: CI01000304_11769604_11771720.mRNA


Basic Information

Item Value
RNA id CI01000304_11769604_11771720.mRNA
length 698
RNA type mRNA
GC content 0.49
exon number 2
gene id CI01000304_11769604_11771720
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11769542 ~ 11771720 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCCCTTCTCAGTCCAGCTCTGATTTCATGCAGCATCTTGGAGAAATGTTATCCACCGGCAACCGTGATCACAGGACTACCGAGGTGGAAACTGACTATACGCTCTGGATCATGTGCGGAATATGAAGGACTATGGACTAAATGTTCTTTTAGCCATGATACCAGTTCATTAACATGCAAAGCCTATTTAGATCCAGCCCCGTGGTCAGCTCGTTACTTTATAACTCTCTCTTTGGGTCTGGCTGCGGCTGCATGGATCACTTCACTCGTGAGCATTCAGTGCGTCCGTCCCGACAGTGCCAGGTGCTGCCTGGTTGGAGCAGCCTGTTTGCACCTGCTCGCTTCACTCACTACTCTCATCCCTGTGTCCTGGATGGCACTCAGCATCTTCCATGCCGATCGTAGTCTGAGCTCCATTCAGTTCCACATGGGAGAGGCTCTGTTTGTAGGCTGGCTGGCCTCGTGTTTGCTATGCACGGCTGGGTTGTTGCAGTGCTGTTCTGGCCCCCTCAGCAGGGCAAGAGAAGAAACCACCAACGCTGAGTCCTCCAGCCACAGCGACATCAGTATGGACACACTGTTTAGCTCAGCCAGCCTAGACTCTCATGCAAATGCATGCATTAGTCAGCTGTAAAAATGAGTTGGTGACAGTAATGATTGTCTTTTTTAAATTCACTTATAAATAAGAAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488656 lncRNA downstream 66162 11701164 ~ 11703380 (-) True G425550
TU488655 lncRNA downstream 71144 11696594 ~ 11698398 (-) True G425549
TU488666 lncRNA downstream 96844 11672362 ~ 11672698 (-) True G425559
TU488636 lncRNA downstream 170276 11598889 ~ 11599266 (-) True G425533
TU488617 lncRNA downstream 190110 11579231 ~ 11579432 (-) True G425517
TU488690 lncRNA upstream 119240 11890960 ~ 11891233 (-) True G425582
TU489161 lncRNA upstream 212897 11984617 ~ 11984915 (-) True G425992
TU489162 lncRNA upstream 213608 11985328 ~ 11985695 (-) True G425993
TU489229 lncRNA upstream 271738 12043458 ~ 12044561 (-) True G426052
TU489239 lncRNA upstream 292659 12064379 ~ 12065037 (-) True G426061
CI01000304_11706322_11747949.mRNA mRNA downstream 21593 11706215 ~ 11747949 (-) True CI01000304_11706322_11747949
CI01000304_11665326_11670757.mRNA mRNA downstream 98582 11665259 ~ 11670960 (-) True CI01000304_11665326_11670757
CI01000304_11654405_11655792.mRNA mRNA downstream 113526 11653935 ~ 11656016 (-) True CI01000304_11654405_11655792
CI01000304_11638983_11647850.mRNA mRNA downstream 120457 11638413 ~ 11649085 (-) True CI01000304_11638983_11647850
CI01000304_11575414_11578638.mRNA mRNA downstream 190904 11575328 ~ 11578638 (-) True CI01000304_11575414_11578638
CI01000304_11773915_11805873.mRNA mRNA upstream 1126 11772846 ~ 11808328 (-) True CI01000304_11773915_11805873
CI01000304_11845828_11848857.mRNA mRNA upstream 73894 11845614 ~ 11849163 (-) True CI01000304_11845828_11848857
CI01000304_11850324_11861609.mRNA mRNA upstream 78057 11849777 ~ 11861609 (-) True CI01000304_11850324_11861609
CI01000304_11897314_11913788.mRNA mRNA upstream 124759 11896479 ~ 11913839 (-) True CI01000304_11897314_11913788
CI01000304_11924813_11936040.mRNA mRNA upstream 152664 11924384 ~ 11936358 (-) True CI01000304_11924813_11936040
TU488239 other downstream 412396 11354883 ~ 11357146 (-) False G425194
TU488240 other downstream 412396 11354883 ~ 11357146 (-) True G425194
TU487810 other downstream 1226877 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 1576647 10192696 ~ 10192895 (-) True G424459
TU487429 other downstream 1605212 10153859 ~ 10164330 (-) True G424458
TU488688 other upstream 96957 11868677 ~ 11872906 (-) True G425580
TU489285 other upstream 564981 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 787134 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other upstream 787302 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489350 other upstream 924278 12719497 ~ 12805926 (-) True G426147

Expression Profile