RNA id: CI01000304_12409495_12416078.mRNA


Basic Information

Item Value
RNA id CI01000304_12409495_12416078.mRNA
length 1540
RNA type mRNA
GC content 0.50
exon number 6
gene id CI01000304_12409495_12416078
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12408897 ~ 12416078 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCAGCCGCTGAAGCCGTGCTGCTGCAGGAGCCACTGCGAGGAGAACGAGCTGCTGCTGCTGCTGCAATCCAACCTAGTCTCGAAAAGAGAGCAGTCTGGAATCTCCGCACTGGACTTTAATATACACAACATATGGTCATTTTTAATCTGGGACGCGTCGCCACAACAAAACGCCAAACTGGCTACAGCCGCAGCGATCGCCAGCTCCCTCATTCGGCAGAAGAGGCAGGCGAGGGAGCGGGAGAAAGCCAATGCCAACCGCTGCGCCAGCAGCCCCAATAAGAGCATTGGGAACTGCGAGAAGCCCAGCAAGCTCAACTTGTTCTCACGCGTCAAACTCTTCGGCTCAAAGAAACGCAAGAGAAGACGGCCAGAGCCTCAGCTCAAGGGGATAGTCACCAAGCTCTACAGTCGACAAGGCTTTCATCTACAACTCCAAGCTGATGGGACCATCGATGGTACAAAAGAGGAAGATAATAGCTATGGTCCGTTCACTACATCTATTTTCAACCTCATCCCTGTTGGACTGCGGGTGGTGGCTATACAGGGCGTTCAGACCAAGCTCTACCTGGCCATGAACAACGAAGGCTACCTGTACACCTCTGAGCACTTCACGCCAGAGTGCAAATTCAAAGAGTCAGTGTTTGAGAACTATTACGTGACCTACTCATCAATGATCTATCGGCAGCAGCAGTCGGGCCGAGGCTGGTACCTGGGTCTCAACAAAGAAGGTCAAATCATGAAGGGCAACCATGTAAAGAAGACCAAGCCGGCTGCACACTTCATCCCTAAACCTCTCAAAGTTGCTATGTACAGAGAGCCGTCGCTCCATGATCTGACTGAGTTCTCCCGTTCCGGAAGTGGTACTCCAACCAAGAGCCGCAGCGCCTCGGCCATGCTCAACGGTGGCAAGACTCTAAGCCACAATGAGTCAACATAACCGCAGGGCACACCTGCGGTCTGCTGCTGTACAGCTGCTGGACTCGACCATCAACTAAACAGCACAAACGCGTTTACAAGAGTGCGGTGAAACCCTTAGCTGGTCACTAGCTAGTGTTTCCTGAAATCACTGTGATGAGAACACAAGTGCAAACCTACATTGTACAATCTTCTGCAGGTCAACCTCCTGAGACAAACTAACCAAGCCATCTTATTGATGTAGGGGTCTGCCTCCGTTTGCGGGTGATCCCCGTTTCCATGTGTAGCATACAGAGCTGTGGTTCTACCCCGTGGCGTTTTCACAGAATCTTCTAGAACTTTTGTGTTTTGCTCCATTTCTTCTTAGGAATGCCAACTCCATAGTGCTGAGTCAACTACAACTTGACAATAGCAGCTTGTGCGACCCATTTATCGGTATATAGAGGCAGAAATCCCAAAGGTGTTGGACATATGATAAAAGTCTTTCAGCTCAGCTTTTTTGAGGCAGCGGTTCATTGTTGTGTGCTTTTTAGATGAGGCGTTTTGCTCCACGCTTCTCTTTTTCTGTCTTTTCAGCGCCCCCCTCACCCCCACCCCCCATTGTTATTCTGCAAATTAAA

Function

GO:

id name namespace
GO:0048671 negative regulation of collateral sprouting biological_process

KEGG:

id description
K04358 FGF; fibroblast growth factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489218 lncRNA downstream 33850 12374696 ~ 12375047 (-) True G426044
TU489299 lncRNA downstream 37044 12371622 ~ 12371853 (-) True G426118
TU489297 lncRNA downstream 38763 12369788 ~ 12370134 (-) True G426116
TU489296 lncRNA downstream 39273 12369341 ~ 12369624 (-) True G426115
TU489295 lncRNA downstream 40986 12367356 ~ 12367911 (-) True G426114
TU489191 lncRNA upstream 9775 12425853 ~ 12426207 (-) True G426017
TU489312 lncRNA upstream 51959 12468037 ~ 12473731 (-) True G426127
TU489373 lncRNA upstream 79548 12495626 ~ 12495835 (-) True G426170
TU489341 lncRNA upstream 117993 12534071 ~ 12535204 (-) True G426142
TU489318 lncRNA upstream 142032 12558110 ~ 12558741 (-) True CI01000304_12558231_12558565
CI01000304_12305300_12310341.mRNA mRNA downstream 98556 12303620 ~ 12310341 (-) True CI01000304_12305300_12310341
CI01000304_12254455_12256896.mRNA mRNA downstream 150786 12254112 ~ 12258111 (-) True CI01000304_12254455_12256896
CI01000304_12249076_12249428.mRNA mRNA downstream 159175 12248566 ~ 12249722 (-) True CI01000304_12249076_12249428
CI01000304_12166589_12192298.mRNA mRNA downstream 216599 12165990 ~ 12192298 (-) True CI01000304_12166589_12192298
CI01000304_12123700_12132292.mRNA mRNA downstream 276391 12123409 ~ 12132506 (-) True CI01000304_12123700_12132292
CI01000304_12442703_12460793.mRNA mRNA upstream 26618 12442696 ~ 12461728 (-) True CI01000304_12442703_12460793
CI01000304_12552338_12553936.mRNA mRNA upstream 136202 12552280 ~ 12553936 (-) True CI01000304_12552338_12553936
CI01000304_12555015_12556002.mRNA mRNA upstream 138648 12554726 ~ 12556002 (-) True CI01000304_12555015_12556002
CI01000304_12558231_12558565.mRNA mRNA upstream 142008 12558086 ~ 12558590 (-) False CI01000304_12558231_12558565
CI01000304_12559311_12559998.mRNA mRNA upstream 143154 12559232 ~ 12559998 (-) False CI01000304_12559311_12559998
TU489285 other downstream 68669 12336701 ~ 12340228 (-) True G426106
TU488688 other downstream 535991 11868677 ~ 11872906 (-) True G425580
TU488239 other downstream 1051751 11354883 ~ 11357146 (-) False G425194
TU488240 other downstream 1051751 11354883 ~ 11357146 (-) True G425194
TU487810 other downstream 1866232 10444355 ~ 10542665 (-) True G424808
TU489325 other upstream 142776 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other upstream 142944 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489350 other upstream 279920 12719497 ~ 12805926 (-) True G426147
TU490328 other upstream 1091563 13507641 ~ 13507922 (-) True G427057
TU490473 other upstream 1515713 13931791 ~ 13950548 (-) False G427154

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005198 False 2762 mRNA 0.42 5 NC_007121.7 26716362 ~ 26738209 (-)
bowfin (Amia calva) AMCG00021334 True 468 mRNA 0.59 3 CM030130.1 14857234 ~ 14866579 (+)
tiger barb (Puntius tetrazona) TU113078 True 3189 TUCP 0.46 5 NC_056708.1 10267354 ~ 10277701 (-)