RNA id: CI01000304_12887576_12889393.mRNA


Basic Information

Item Value
RNA id CI01000304_12887576_12889393.mRNA
length 835
RNA type mRNA
GC content 0.48
exon number 3
gene id CI01000304_12887576_12889393
representative False

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12887224 ~ 12889393 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAAAGCCAGGCCAGAACAACTGCAAAGACAGTGACAGTGAGAGCGTCAGTGGAGAATCCAAACCCTCCATCCGGAGCAGCTCCAGAGACAGACTGACAGACAGTAGCGCGGAGGCTGTCTGCACCCTCAGGCCTGCAGGCTCTGGTATGTGTTTGTGCTCGGGTGGTGATAAGAACATCCTATTTACTCAGCTGGCAGCTTCAGTGGAGACTCAGGCTGAAGCGCGACTGTGCTTATATACCGTAGAAGTGAAGACGACAGGAAGTAACACAGTGAAAAATGCTCGTGTGGAAACTCAGGCAGTTTGGCATAGGCCCTCTTCAAACCTCAAGCCTTGGCTCCCGCAGTGGAGATGTGAGTCTGTGAGTGTGTGCCGGCACTATCAGATATCGGGCATAATTAGAGCTGTCAGCTGGAGGGCGAGGCAAGTCGTCGGAACAGACACGGCAGAACGAGTTGAGCACGACCGCTCCTGCGTGTAGCTATAGGATGCTTGGCCAGGCATGAAATGAAATAAGTAATTTGATGTTGACATCAGAAATTGAAATGATACCTGCAGCCCCTCGTCAGGGAAGAGAGAGACCGAAGAGATAAAGCGCGAGAGGGGGGCGAGGAGAAGGAAAGTGAGATAGGAAAAGAAGAAATGCAAGTAGAAATAGGGGAAATAGATAGAGTTAGAGATGAAACATGAGATAGAGTTTGATTATTGGACAGGTAAAAACAACCCGCAAAGATAGTTTGATTATTGGACCGGTAAAAACAACCCGCAAACATATGCAGAAGGTGTTGTGTATGATGGGTTTTAACTTGAGTCTAAAAGGGATAGTTAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489349 lncRNA downstream 166098 12719497 ~ 12721126 (-) False G426147
TU489327 lncRNA downstream 261846 12621467 ~ 12625378 (-) False G426135
TU489329 lncRNA downstream 261846 12621467 ~ 12625378 (-) True G426135
TU489395 lncRNA downstream 297112 12589913 ~ 12590112 (-) True G426188
TU489391 lncRNA downstream 298004 12588923 ~ 12589220 (-) True G426184
TU490291 lncRNA upstream 206030 13095423 ~ 13095773 (-) True G427020
TU490294 lncRNA upstream 212052 13101445 ~ 13101719 (-) True G427023
TU490296 lncRNA upstream 215185 13104578 ~ 13104792 (-) True G427025
TU490313 lncRNA upstream 251440 13140833 ~ 13141045 (-) True G427042
TU490275 lncRNA upstream 402862 13292255 ~ 13292268 (-) True G427004
CI01000304_12687020_12696284.mRNA mRNA downstream 190940 12686457 ~ 12696284 (-) False CI01000304_12687020_12696284
CI01000304_12570121_12574061.mRNA mRNA downstream 313163 12570059 ~ 12574061 (-) True CI01000304_12570121_12574061
CI01000304_12559311_12559998.mRNA mRNA downstream 327226 12559232 ~ 12559998 (-) False CI01000304_12559311_12559998
CI01000304_12558231_12558565.mRNA mRNA downstream 328634 12558086 ~ 12558590 (-) False CI01000304_12558231_12558565
CI01000304_12555015_12556002.mRNA mRNA downstream 331222 12554726 ~ 12556002 (-) True CI01000304_12555015_12556002
CI01000304_12953008_12953457.mRNA mRNA upstream 63311 12952704 ~ 12953480 (-) False CI01000304_12953008_12953457
CI01000304_13036242_13039203.mRNA mRNA upstream 145292 13034685 ~ 13039203 (-) False CI01000304_13036242_13039203
CI01000304_13068737_13075920.mRNA mRNA upstream 179109 13068502 ~ 13075920 (-) True CI01000304_13068737_13075920
CI01000304_13185020_13207799.mRNA mRNA upstream 294825 13184218 ~ 13207799 (-) True CI01000304_13185020_13207799
CI01000304_13210441_13259571.mRNA mRNA upstream 320335 13209728 ~ 13262698 (-) True CI01000304_13210441_13259571
TU489325 other downstream 327089 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other downstream 327089 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489285 other downstream 546996 12336701 ~ 12340228 (-) True G426106
TU488688 other downstream 1014318 11868677 ~ 11872906 (-) True G425580
TU488240 other downstream 1530078 11354883 ~ 11357146 (-) True G425194
TU490328 other upstream 618248 13507641 ~ 13507922 (-) True G427057
TU490473 other upstream 1042398 13931791 ~ 13950548 (-) False G427154
TU490643 other upstream 1300075 14189468 ~ 14208299 (-) False G427309
TU490767 other upstream 1379030 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490754 other upstream 1394278 14283671 ~ 14286873 (-) True G427362

Expression Profile