RNA id: CI01000304_12953008_12953457.mRNA



Basic Information


Item Value
RNA id CI01000304_12953008_12953457.mRNA
length 777
RNA type mRNA
GC content 0.39
exon number 1
gene id CI01000304_12953008_12953457
representative False

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12952704 ~ 12953480 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGTTGCTTTTAATGGGTCAAAAATGTTTAATTCAAAAATTTTATACTCATATCTCATATTTTTCTGGCAGAAGGACGTGACCCTGAAGCCCCATGAGCGGAGGCAGAACCAGGCAGGACCGCTGCGCAAGAAGAAGCCCGGCCGAGTGCCGAACGGACTGAGCTTGGACCTACACAAGGACCGACTCAACCACAACAACCACCAGCACCACCACTCAGACCAGGAGAACAACCCTCGGCTGGCCCATACACACAGCAAGAAGAAGAAACACCTGCAGAAGAAACACCGACCTGTGAGTCTAACTTTATCTCACTATGTGTCCAGAAATCATGAATGTTATCTTTTCAAACAGGAACTGGGAGCATTGATGTATTTGATCAATTTTGTTGCTAGGCCTTTAGTTTATAGGCTTGAAAGGATTGATCTATTGATTTCCCACAAGTGCATGAGCTTCAGCATTTGGTTGGAGTAAAATTGGTGTCAGACGGAGTTGCATAATGGTTTTATCATGATAAGAAACCAGTCTAGTTGATGTCATTGTTACCCATTATTCTGGTGCAGTGTTTACATACTATTATAGTTTTTAAGTAATATTTTGAATTGACTTTTATTTTTATATTTTCAGTTTTCATTTTAATAGTCATCTAATAGTCAAAGATAATAACCCTCTTCTGGATGAGCTTCTGTCTGTGTTCCTTTTGCACCTAATTACAGTTTAGCTCAATAAGGCACTGCTTTGTTTCGGTGTTTTTTATGAATATCTTTACATAATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU489349 lncRNA downstream 231578 12719497 ~ 12721126 (-) False G426147
TU489327 lncRNA downstream 327326 12621467 ~ 12625378 (-) False G426135
TU489329 lncRNA downstream 327326 12621467 ~ 12625378 (-) True G426135
TU489395 lncRNA downstream 362592 12589913 ~ 12590112 (-) True G426188
TU489391 lncRNA downstream 363484 12588923 ~ 12589220 (-) True G426184
TU490291 lncRNA upstream 141943 13095423 ~ 13095773 (-) True G427020
TU490294 lncRNA upstream 147965 13101445 ~ 13101719 (-) True G427023
TU490296 lncRNA upstream 151098 13104578 ~ 13104792 (-) True G427025
TU490313 lncRNA upstream 187353 13140833 ~ 13141045 (-) True G427042
TU490275 lncRNA upstream 338775 13292255 ~ 13292268 (-) True G427004
CI01000304_12887576_12889393.mRNA mRNA downstream 63311 12887224 ~ 12889393 (-) False CI01000304_12887576_12889393
CI01000304_12687020_12696284.mRNA mRNA downstream 256420 12686457 ~ 12696284 (-) False CI01000304_12687020_12696284
CI01000304_12570121_12574061.mRNA mRNA downstream 378643 12570059 ~ 12574061 (-) True CI01000304_12570121_12574061
CI01000304_12559311_12559998.mRNA mRNA downstream 392706 12559232 ~ 12559998 (-) False CI01000304_12559311_12559998
CI01000304_12558231_12558565.mRNA mRNA downstream 394114 12558086 ~ 12558590 (-) False CI01000304_12558231_12558565
CI01000304_13036242_13039203.mRNA mRNA upstream 81205 13034685 ~ 13039203 (-) False CI01000304_13036242_13039203
CI01000304_13068737_13075920.mRNA mRNA upstream 115022 13068502 ~ 13075920 (-) True CI01000304_13068737_13075920
CI01000304_13185020_13207799.mRNA mRNA upstream 230738 13184218 ~ 13207799 (-) True CI01000304_13185020_13207799
CI01000304_13210441_13259571.mRNA mRNA upstream 256248 13209728 ~ 13262698 (-) True CI01000304_13210441_13259571
CI01000304_13276793_13278145.mRNA mRNA upstream 322767 13276247 ~ 13278145 (-) True CI01000304_13276793_13278145
TU489325 other downstream 392569 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other downstream 392569 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489285 other downstream 612476 12336701 ~ 12340228 (-) True G426106
TU488688 other downstream 1079798 11868677 ~ 11872906 (-) True G425580
TU488240 other downstream 1595558 11354883 ~ 11357146 (-) True G425194
TU490328 other upstream 554161 13507641 ~ 13507922 (-) True G427057
TU490473 other upstream 978311 13931791 ~ 13950548 (-) False G427154
TU490643 other upstream 1235988 14189468 ~ 14208299 (-) False G427309
TU490767 other upstream 1314943 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490754 other upstream 1330191 14283671 ~ 14286873 (-) True G427362

Expression Profile