RNA id: CI01000304_13406343_13432947.mRNA


Basic Information

Item Value
RNA id CI01000304_13406343_13432947.mRNA
length 2398
RNA type mRNA
GC content 0.44
exon number 7
gene id CI01000304_13406343_13432947
representative False

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13403026 ~ 13433611 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATGGTTAAGAAGTTCTGTGGATGTGGCCAGTCCTCCCGCTGCAGTACTTCCTGCTACAGACACTCATCATGTTGAAGAAGTTGATCAAAAGGTCAAATTCCAAAAATTAAATCTAAATGCTTGATTCTTTATGCCTCAGAAAGATTTAAGAATCACCATTAACAGTGTCATTTACATCCTAAAGTCTCATCTTAATCCAATAAAAACACTTGCAGCGGTTCTCGCAAATTAAGAATGACATTCTAACTGTAAGTCGGAGGGAGTCTTTGCCAAGATGGTCTGGGTTTATTAAAACCCCCTGAGATTATTTTAATAGATTTTGTTTCAGTTCTGCAGAAGAGGCTTGAAAAAGCTTAGGTGAGTAAGGCTGTTCTTGCGAAACAGCCTCGGGTATGTAATACCAGTAGTTAAACACTTAGAACTAGGGGCCTCTGAGCGGTTTCCTCCCACACAGCTGAATGTGATAGAGTGTGTGCTCTACGTGCTCTTCAAGAGCACATACTGTTCAAGTAGGCCACTTTAATGTTTACATAGTGTGATGCACATGACAAATTTGAAAATATTGCATTGTATTTAGTTTTTGTATTAGATAATACAAAAACTCGTTTCTTTCAGCCTACCATCTTCATACTGACTGACTACTTTTCGTTCAGGGGCTGATAATGTGCAGCTTTAATTGTGCTTTAACTGGCAAGTTTACATGGAAAAACACATCTTTCATGCAAGAAACTCAAGTCGCCTCTCAGCATGTGTGGGAGCGTTTAATCAGGCGAAATGCTCTGACTCATGTGTTGGTGTACCTTGCGCATATGAAGAAAGTTTATAAGGTTTTCTGTCCTGTGGACTGGCGTGCACAGCTTCTTCATCTGGTGTTGGCACGGCCACAGACAGATGCTTCAAACATCTGGTTTTCTACGATGAAGGGGGCAGAACTCATGCCGCACATATACACACAAACACGTGTTCCTGTCTGTTCAAAGGGTGTGGGAACGGTGATAGGGGAGGTCCCTGAGTTCTTCACGGCTCGGGCAGCCGAGTTGTCAGGGACGGGCCCGTGTGATGAAGGTTATGAGGAGTTTGCAGAAATGTTCCACTCAGCAGTGGTAAGAGCAGTCAGATGTAGGTCTTTCTCAACAGTCTTTCTCATGAATGGGAAGTTTCTAGTCATGTCAGACTTACGGGGAACCTTTATCTTGGTTGTTAACCTCAAACCGTCACTGATGGAAGTGCGTTTCTGTGTTTGTGTGACGTCTAAGTCTAACAGAATGGATCCAGACATCCTTTGCACAAAGGTCAAGGGCATGGGATTACATGTCAAGTGTCTGTGTCGTCATGTTGGTTTCTAGAGCGCACCAGACATATCGCACGTGTGTGACTGAACACACACGAGCCAGGCTGGCACAAAGCGACAAGACATCATCAGCTGCATCCGTTTATAGTCATGACCAGCTGTTTTCGTCATAGTCACATTAGGGTTTTTTTTGTTGTTGTTGTTGTTGTTGTTTTATTTTATTTAAAAAACAGTGTTAAAACAAGAGCAAAAACTGTCTACTTCCTTGTTTAAGTTGGATTAACACTGTTAAAAAAGCAAATTTTGTTTTATGAATCATTGTCTCCAGCACTTAAAGGGTTAATAGTCTGTGAATTCTCCTCTGCCAACTCCCAGGCAGTCGAGTAAGTAACCCGATTCGGAGGCATCTGCTTGGGGAAGGGCGTGTATCGGCCTCCCCCCTCGCCCTGATTCCTCTCTGCTCCTCTCCTCCTCCCGGAGCTGTGGTTAGCCCTGCCCTTATGGGTCATGTGACTTCTCTGAAACTCCCTCCTCCCCCTGCCTCCCCCCGTGTTTCCAGTAAACTGCTGAAAGGAGGGGCTGAGTCAGTCTTCAACCAGCTTCCCTTTGACCACAGCTTGTTAAAGAATTTGTCAACGTGGACTCCAGGGTGCACATTTTTTTCCTCCTTGTGATAGATAGATTTGAATTTTTTTCGTCTCTCCCTCCCTGGAACGGTCAGATTACGTCAGGCACCCATAATCACTTCCTGCGCTACGCCGTAGAAAGAGAGAGAGAGTGTGTGAGAGTGTGTGTGCGTGTGTGATAGAGAGAGCGGCTCGTATAAAGGACTTTGATATTTGGCGGCATGTTGTGCCAGAGACGTTTGTCTTGGTGCCTGTCTGAAAGGGTTTCATTCAAAAAAAAAAACAGAAAAAAGAGGGGGATAATAATCTGAAGAGGGGGGAGTACAATTTACTTTATAACCTGATTACGGTCTTCCTGTGATTCTCCCAGCTGGCGGTCTGATTTTCCGGATCGTGTTAGATCATCCGTAATGTTTGCTTTTGCAAGCTCACTTGCTCCACAGACGGACAAATTAACATTCCATGCAAATGAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU490262 lncRNA downstream 5623 13398380 ~ 13399670 (-) True G426991
TU490254 lncRNA downstream 7426 13395162 ~ 13397867 (-) True G426983
TU490266 lncRNA downstream 25351 13379166 ~ 13379942 (-) True G426995
TU490280 lncRNA downstream 31634 13373086 ~ 13373659 (-) True G427009
TU490275 lncRNA downstream 36446 13292255 ~ 13292268 (-) True G427004
TU490320 lncRNA upstream 52145 13485756 ~ 13486085 (-) True G427049
TU490321 lncRNA upstream 65421 13499032 ~ 13499264 (-) True G427050
TU490323 lncRNA upstream 68539 13502150 ~ 13502415 (-) True G427052
TU490326 lncRNA upstream 72234 13505845 ~ 13506072 (-) True G427055
TU490271 lncRNA upstream 76468 13510079 ~ 13513826 (-) True G427000
CI01000304_13367200_13384209.mRNA mRNA downstream 20755 13366547 ~ 13384538 (-) False CI01000304_13367200_13384209
CI01000304_13342458_13361412.mRNA mRNA downstream 43881 13342420 ~ 13361412 (-) True CI01000304_13342458_13361412
CI01000304_13276793_13278145.mRNA mRNA downstream 127148 13276247 ~ 13278145 (-) True CI01000304_13276793_13278145
CI01000304_13210441_13259571.mRNA mRNA downstream 142595 13209728 ~ 13262698 (-) True CI01000304_13210441_13259571
CI01000304_13185020_13207799.mRNA mRNA downstream 197494 13184218 ~ 13207799 (-) True CI01000304_13185020_13207799
CI01000304_13444023_13466208.mRNA mRNA upstream 10412 13444023 ~ 13466208 (-) True CI01000304_13444023_13466208
CI01000304_13479162_13481853.mRNA mRNA upstream 45130 13478741 ~ 13482294 (-) True CI01000304_13479162_13481853
CI01000304_13517595_13527868.mRNA mRNA upstream 83565 13517176 ~ 13527868 (-) True CI01000304_13517595_13527868
CI01000304_13529418_13530787.mRNA mRNA upstream 95519 13529130 ~ 13530787 (-) False CI01000304_13529418_13530787
CI01000304_13532811_13534129.mRNA mRNA upstream 99200 13532811 ~ 13534129 (-) False CI01000304_13532811_13534129
TU489350 other downstream 365978 12719497 ~ 12805926 (-) True G426147
TU489325 other downstream 845158 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other downstream 845158 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489285 other downstream 1065065 12336701 ~ 12340228 (-) True G426106
TU488688 other downstream 1532387 11868677 ~ 11872906 (-) True G425580
TU490328 other upstream 74030 13507641 ~ 13507922 (-) True G427057
TU490473 other upstream 498180 13931791 ~ 13950548 (-) False G427154
TU490643 other upstream 755857 14189468 ~ 14208299 (-) False G427309
TU490767 other upstream 834812 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490754 other upstream 850060 14283671 ~ 14286873 (-) True G427362

Expression Profile