RNA id: TCONS_00021918


Basic Information

Item Value
RNA id TCONS_00021918
length 3074
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id XLOC_009840
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19805021 ~ 19809117 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggttcactgcggttttccacaaggtaagtaaaaaataaacaaataaagacgatttgttgataaagcatgtactgtaaactagcgacgttatctaattacatcaagttcatttattaaaaacatatttttttcacatataacgttggtcaggcattagaacaatatatacattttaagataaggaacagtgtaaccagattgttgtttttcACAATAGAATTagtgcaaaatctatatataatatgcaatatgcaactctaataatacaaatgtattcgtaattgtttcaatattaaagaacatcaagtgtttccaaaggtttattgtaaaaacaattattttccatgcctttaaaggaaaaaaggcagaaattttgcctgtctgagcacattttattcattgtacaacacaaaactaaacaaaaaaacagattaatctgccacacacacacacacacacacacatatatatacaggtgtaaattataaggtgttcactgttcagatatgaatatttttttctttgctcttttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaaaaagtaaaatcactttacccatgtttatatgttaaattgcacttgtctctatctctgttaacacatttgtgtttgtttgattaaTTCTTGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTTTATACTCAGATTTATTATCAAGATCTCAATTATTAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTCTCTGCATATTAAATATCTACATTGTTTAGGCATATATGATTGTAtgagataaaatgcatttattcgttcactactattgtaataacagaaagagaagcattagttttactattactattgtttatgacaaacattaaaaaactacagCATAAGCTCACAAAATATTGTGGCCTAACTGTTTAAACTATTTGTTCTGGGTGTTGATAGTggccaaccattttttttctttttcagaaagtattttgttttgtctgattttatgaCACCTTATAGGCCATCAACTGTCAACAATGGGGTTTAGGAAATTAGAACTGCTTATGCTGCTTGTCTACTAGTCTTAGGATAAGttagaaatgttataaatgtacattttttgttgtgtttatctGGTACAGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGAGCCTTGCTCCAGTGACTGTCAGTGTGTACTTCATTGCTTCCATTAGTCCCTGTATCTGTAGACCTAGGTGACAGTGGGCTAGAgtcaaattttgtttttatttaaactaaggcaTACTGAGGGCCTTTTTATCTCAGATTTGGTCATGCAAGTATTAatatatcctaaaatatttttatattctttccatTGGTGGAAAAGATGTTGGTATAGTTATTTTTAATGGACTGCTAAGATCTCAGCAGACATTTTCTTAAATGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAACCCTTTATCTGTCCTGCTTCCACACCAGATATACTGCCAATTTAAGTAGATGTGAACCATAAGCATAACCATTTCAAGAATGCACAaggtactttaaactgtatgtgttgtaactaaattaacaagaaaacagcTCTGTGATGTTCACCTAGTAAAATTAgattagaagatataaactgTTATGCACTTGTTCTGTACGGTTTCATTCCTTTTTCAAACAATGGCATTTTTGAAGGTTTATTTACAGCTAAGGATTAAGGATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAGAGTTGAAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAAGCACATGAGTTTATATCTGAGTTTATATCATAGATGAACTATGTGATTATCTTAAACTGATCTACAGGTAAATGCAAAAACTTATtggtttacttatttgtttgtttgtttgtttgtttgtttttgtatatgtTAACCAGGTGAAATGGAGTGAGGCATACAAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGATATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGGTAACAATATCCAGTAGAATTTGTTTTAGTTGTTCTATAACCTATTTGAATAGTATTGTGATTTTTGATTGCTTATCACTGTAGACCGCAGCAGCTCTGGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgaagTCATGAAAAATTGTAggtgttactattattgtcattttttcagtagcagaagcAAAGACAACAAACAACAGAAGTGATATGGATGTCTTCGTCATATGGCATGGTATGTACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTGACGTATAATCCTTGTTATACAactttctttttataaatatatttcagactcTGCTGATCCAGCAACAATAAGGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGGAGAAGCAGTGGATTCTTGTGGCAGAGATGGCCAACCACAATAAATACCTTTCAACTCATCCTGATTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAAAGTACtggtatgtatttgtattatttggcacagacataagcataaggttacccagtccaaagaatataatatatttttatgttgttgtgttcttcTTTTAAGATTCGACATGTGGCCTAAACAAAGAGGGGTTAAAAGGTCTATGGATCATCATTCTCAgaaagcaacaaaataactgataaataaacaacaata

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0030163 protein catabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0006412 translation biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022624 proteasome accessory complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005838 proteasome regulatory particle cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005840 ribosome cellular_component
GO:0101031 chaperone complex cellular_component
GO:0008540 proteasome regulatory particle, base subcomplex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0070003 threonine-type peptidase activity molecular_function
GO:0019843 rRNA binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019641 lncRNA upstream 90625 19686713 ~ 19715210 (+) True XLOC_009837
TCONS_00021917 lncRNA upstream 291844 19508738 ~ 19513991 (+) True XLOC_009833
TCONS_00021915 lncRNA upstream 393414 19375634 ~ 19412421 (+) False XLOC_009831
TCONS_00021919 lncRNA downstream 721217 20530125 ~ 20531772 (+) True XLOC_009847
TCONS_00021920 lncRNA downstream 876032 20684940 ~ 20695517 (+) False XLOC_009848
TCONS_00021708 lncRNA downstream 880008 20688916 ~ 20695517 (+) True XLOC_009848
TCONS_00019660 lncRNA downstream 1062107 20871015 ~ 20880205 (+) False XLOC_009850
TCONS_00019662 lncRNA downstream 1062136 20871044 ~ 20887424 (+) False XLOC_009850
TCONS_00019644 mRNA upstream 71686 19732543 ~ 19734149 (+) True XLOC_009839
TCONS_00019643 mRNA upstream 71827 19732543 ~ 19734008 (+) False XLOC_009839
TCONS_00019640 mRNA upstream 124553 19677484 ~ 19681282 (+) True XLOC_009836
TCONS_00019638 mRNA upstream 128460 19637384 ~ 19677375 (+) False XLOC_009835
TCONS_00019647 mRNA downstream 246970 20055878 ~ 20151747 (+) False XLOC_009841
TCONS_00019648 mRNA downstream 247122 20056030 ~ 20154859 (+) True XLOC_009841
TCONS_00019649 mRNA downstream 352897 20161805 ~ 20164454 (+) True XLOC_009842
TCONS_00019650 mRNA downstream 358903 20167811 ~ 20194385 (+) False XLOC_009843
TCONS_00019652 mRNA downstream 389156 20198064 ~ 20238985 (+) False XLOC_009844
TCONS_00019642 other upstream 101297 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019630 other upstream 677364 19065345 ~ 19128471 (+) False XLOC_009830
TCONS_00019610 other upstream 2234901 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019609 other upstream 2288753 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019587 other upstream 3651377 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019651 other downstream 358926 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019655 other downstream 487915 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019658 other downstream 687865 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019667 other downstream 1104505 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019682 other downstream 1890098 21699006 ~ 21703679 (+) False XLOC_009863

Expression Profile

//