RNA id: CI01000304_13517595_13527868.mRNA



Basic Information


Item Value
RNA id CI01000304_13517595_13527868.mRNA
length 1628
RNA type mRNA
GC content 0.41
exon number 7
gene id CI01000304_13517595_13527868
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13517176 ~ 13527868 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTCCTGAACAGCAGTAATGACACCTGTATTCATCTGCTTTGCTCTCTGGAGAGTCTGAACCCTGAGCTGGTGGACTTCACCTGGAGTGGAAAGGATCAAAGGTCACTTCATCCATCCACATCTTATGACATAAAGAGTGAGCTGCATCTGTGTAAACCTGACTGGAGTGATGGAGAGACAATCACCTGCCATGCTAACTACTCAAATAGCCAAACCCAAACAAGTATACAACTCCCCTCACAGCATACTTCTGACAAAAAATCCAGCCAGAAATCTCTGATTTGTGTGGTCCTTTTCAGCACCTTCATCATCTGCATCGTCTTCATCTGGATGTTCTTCTGCTTTTCCAAATCACATCCAGGTCTGTCCCTGCAGCTCCTGAACAGCAGTAATGACACCTGTATTCATCTGCTCTGCTCTCTGGAGAGTCTGAACCCTGAGCTGGTGGACTTCACCTGGAGTCGAGAGGGTCAAAGGTCACTTCATCCATCCACATCTTATGACATGAAGAGTGAGCTGCATCTGTGTAAACCTGACTGGAGTGATGGAGACACAATCACCTGCCATGCTAACTACTCAAATAGCCAAACCCAAACAAGTATACAACTCCCCTCACAGCATACTTCTGACAAAGATGCGGGGTCTATCAGAGCAGTTGAAGGAGCGACTGTCCATCTGCCCTGCCACTCTCCACCTGATGACAGTGTACAAGTTACTGGAAAGTGGACAAAAAATAGTGCAACTAACAAAACTATCTGTGAATGGAATTTTAATAAAATTACTGGATCTTCCTCCGGTGATTGCATTCCTCATTTTACATTCAACAGAACGTCTTTTACACTAAGTATAGAAAATGTTCAGCCCAGTGACTCTGGTAATTACAGCTGTAAAACAACAAGATTAATTCCACCACCGACATTGGACAACATCTCAAATGTGATACTCCAAGTTGAAGCTATTGGCATTAAGCAGTTGATCATCATATGCAGTGCTGCTGCAGGCCTCATCCTCTGCATCATCATCATTGTTGTTCTTTGCAAATCATATGGTGGACTAAAAACAGCTAAAATAGAAGGTAGAAAGCGAGACGAAATCGGATCTGTAGTGTTCAGCAATAAAGTATATGAGAACTTCAGTTTCGCCATGTCCCGCCAAAACACACAGTCCATTGCTAAACCTCAGACAGAAGAGTGTATTTATGAGAACTAACTGCTGTTGCTGCTTACATTAGCTTTGTTTAACGCCAGACGGGAACAGTTGTTACGAACGCAGTACGTGTGTTTACGTAGTTTTTCCAAGACATTTGATGGTGCACCTTGAATGTGAAGAAAATGGCCACTTACTGACTTGAAAACTGTAAGTAGTTAGCCTACTTTTATCAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAGTTCTCATTCTGTTTAAGCACTGTATGGGAGTAGCCTACTAAACTATTATGTGTCATAAATTAAATTATATGATTATGAACAGGACTTCATATCTGTTTTTATTAGATAAAATGCTAGGGCATTATTACAATCTCACTTTGCACTTTTTGTCACTTTTGGTTTTGGTATGGTGTTTGGACTAAATTTTGTAGTATTTCATTTCTTGTGAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU490271 lncRNA downstream 3350 13510079 ~ 13513826 (-) True G427000
TU490326 lncRNA downstream 11104 13505845 ~ 13506072 (-) True G427055
TU490323 lncRNA downstream 14761 13502150 ~ 13502415 (-) True G427052
TU490321 lncRNA downstream 17912 13499032 ~ 13499264 (-) True G427050
TU490320 lncRNA downstream 31091 13485756 ~ 13486085 (-) True G427049
TU490264 lncRNA upstream 2324 13533250 ~ 13533544 (-) True CI01000304_13532811_13534129
TU490337 lncRNA upstream 61279 13589147 ~ 13589370 (-) True G427064
TU490355 lncRNA upstream 81518 13609386 ~ 13609600 (-) True G427076
TU490359 lncRNA upstream 84270 13612138 ~ 13613990 (-) True G427077
TU490418 lncRNA upstream 253937 13781805 ~ 13782038 (-) True G427130
CI01000304_13479162_13481853.mRNA mRNA downstream 34882 13478741 ~ 13482294 (-) True CI01000304_13479162_13481853
CI01000304_13444023_13466208.mRNA mRNA downstream 50968 13444023 ~ 13466208 (-) True CI01000304_13444023_13466208
CI01000304_13406343_13432947.mRNA mRNA downstream 83565 13405293 ~ 13433611 (-) False CI01000304_13406343_13432947
CI01000304_13367200_13384209.mRNA mRNA downstream 132638 13366547 ~ 13384538 (-) False CI01000304_13367200_13384209
CI01000304_13342458_13361412.mRNA mRNA downstream 155764 13342420 ~ 13361412 (-) True CI01000304_13342458_13361412
CI01000304_13529418_13530787.mRNA mRNA upstream 1262 13529130 ~ 13530787 (-) False CI01000304_13529418_13530787
CI01000304_13532811_13534129.mRNA mRNA upstream 4943 13532811 ~ 13534129 (-) False CI01000304_13532811_13534129
CI01000304_13541959_13564807.mRNA mRNA upstream 13357 13541225 ~ 13564807 (-) True CI01000304_13541959_13564807
CI01000304_13692322_13711234.mRNA mRNA upstream 164090 13691958 ~ 13711234 (-) True CI01000304_13692322_13711234
CI01000304_13741930_13742220.mRNA mRNA upstream 213826 13741694 ~ 13742868 (-) True CI01000304_13741930_13742220
TU490328 other downstream 9254 13507641 ~ 13507922 (-) True G427057
TU489350 other downstream 477861 12719497 ~ 12805926 (-) True G426147
TU489325 other downstream 957041 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other downstream 957041 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489285 other downstream 1176948 12336701 ~ 12340228 (-) True G426106
TU490473 other upstream 403923 13931791 ~ 13950548 (-) False G427154
TU490643 other upstream 661600 14189468 ~ 14208299 (-) False G427309
TU490767 other upstream 740555 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490754 other upstream 755803 14283671 ~ 14286873 (-) True G427362
TU490815 other upstream 833580 14361448 ~ 14361892 (-) True G427423

Expression Profile