RNA id: CI01000304_13932457_13932762.mRNA



Basic Information


Item Value
RNA id CI01000304_13932457_13932762.mRNA
length 1136
RNA type mRNA
GC content 0.46
exon number 1
gene id CI01000304_13932457_13932762
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13931949 ~ 13933084 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCATATAAACCTTGGGAGGATCCTCTGAAAAGAGGAAACACACCCGCCATTTTCCTACGAGCCTTTTAAACCCAGCAGGGGGAGGCAAGATCCGAGAGGAGAGCCATTGAGGAGGAAAAAGGGGGAGTTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGAGAGGAGAGGGCGAGGGAGAGTGCGTGACAGAGGGGTTGAGAGAGAGAGAGAGAGAGAGGACGCTGCTGTTAATAGAGGAGGAAACGTTTGGTACGTAAATGTCGCGATCAGCTGACGTTATACATACAGAGCAAACTTCATTTGGACTCTCTTAAGCGCCGGATGCGTCTTACTTGCAATCTCATTTCTTTTCTCTCTTTCTTCCCCAGTCAGGTGGCGGAACAGTGCACATCCCAGGGACTGCCAGCATTGCCGTTGGATTTAGCAGCCCGAGTAGATTTCCCCCCCTCTTTTGTTGTTTTTCCCCTTTTTCTGTTTGTTTAAAACTGCGAGGATGTCTGGACAAAGCATAACGGATCGGATAACGGCAGCGCAACACAGTGTTACCGGTTCCGCGGTGTCCAAAACGGTGTGCAAGGCGACCACGCACGAAGTCATGGGGCCAAAGAAGAAGCATTTGGATTGTAAGTGTCATGGGATTTTGTACTACGTTGCTATCGGACCCGCGTTTGAAAGTTACGTCAGTCACTCGTCGCCCTGGGAACGAGAGGTTCTGGGCTCGAGGCCTGCAAAAGATTCACGTTCAGTGCTGCTCGTGTTATTTAACCAGCTTCCTCCAGCGACCTTTGCTGATGTTTAACCGGTGACTAGTGATCATTTGAGTCCCTTTTGCATGGAGTTTTCAGATAGCATGAGTACAGTGCAGCGCATTTAATGATTTAACTTGCTAACTAATAATTAACCACATTTAAAAAATGAGCCCATCTGCTGTCTAATTAGGGCACTTGCAGTCGAATGGATTCATTGAGCAATCTGATGATTGCAAACAAACATTTGCTGCAAGAGAAAATCACTCATACTTTGTCTTTTGAATGTTGCAAAATGAAAATACAGCATGTTTTATTAGGGTCACTTTACCACCATATGACTATTGTGGATTTCTTAAAGGAATAGTTAACAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU489821 lncRNA upstream 58831 13872905 ~ 13873118 (+) True G426592
TU489755 lncRNA upstream 190389 13739700 ~ 13741560 (+) True G426526
TU489574 lncRNA upstream 242353 13680625 ~ 13689596 (+) True G426348
TU489603 lncRNA upstream 313219 13615987 ~ 13618730 (+) True G426377
TU489747 lncRNA upstream 350906 13580837 ~ 13581043 (+) True G426518
TU489532 lncRNA downstream 43881 13976965 ~ 13978162 (+) True G426307
TU489588 lncRNA downstream 118664 14051748 ~ 14062044 (+) True G426362
TU489601 lncRNA downstream 151954 14085038 ~ 14095622 (+) True G426375
TU489578 lncRNA downstream 182665 14115749 ~ 14123481 (+) True G426352
TU489577 lncRNA downstream 192234 14137145 ~ 14138649 (+) True G426351
CI01000304_13744571_13748279.mRNA mRNA upstream 183631 13743675 ~ 13748318 (+) True CI01000304_13744571_13748279
CI01000304_13731299_13731640.mRNA mRNA upstream 200299 13731242 ~ 13731650 (+) True CI01000304_13731299_13731640
CI01000304_13613026_13686604.mRNA mRNA upstream 245345 13613026 ~ 13686604 (+) True CI01000304_13613026_13686604
CI01000304_13578347_13595075.mRNA mRNA upstream 336852 13578049 ~ 13595097 (+) False CI01000304_13578347_13595075
CI01000304_13435609_13438459.mRNA mRNA upstream 493219 13435507 ~ 13438730 (+) True CI01000304_13435609_13438459
CI01000304_13947668_13967998.mRNA mRNA downstream 13074 13946158 ~ 13969190 (+) True CI01000304_13947668_13967998
CI01000304_13989055_14004354.mRNA mRNA downstream 55971 13989055 ~ 14004526 (+) True CI01000304_13989055_14004354
CI01000304_14005720_14006514.mRNA mRNA downstream 72636 14005720 ~ 14006860 (+) True CI01000304_14005720_14006514
CI01000304_14011581_14044797.mRNA mRNA downstream 78242 14011326 ~ 14044960 (+) True CI01000304_14011581_14044797
CI01000304_14108490_14112755.mRNA mRNA downstream 175406 14108490 ~ 14113061 (+) True CI01000304_14108490_14112755
TU489575 other upstream 353102 13556451 ~ 13573943 (+) True G426349
TU488854 other upstream 1492863 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other upstream 1492863 12436554 ~ 12436605 (+) True G425718
TU488852 other upstream 1492863 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU487556 other upstream 3376245 10555614 ~ 10555704 (+) True G424559
TU489538 other downstream 396964 14330048 ~ 14330886 (+) True G426312
TU490061 other downstream 1015806 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 1952370 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 2150146 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 2571778 16513714 ~ 16541045 (+) True G428096

Expression Profile