RNA id: CI01000304_15231039_15234179.mRNA



Basic Information


Item Value
RNA id CI01000304_15231039_15234179.mRNA
length 732
RNA type mRNA
GC content 0.48
exon number 3
gene id CI01000304_15231039_15234179
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15231039 ~ 15234583 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACACAGGCGCAGTGGGAGCAGAGGTCTCAATGGTGCTACAGTCTCAGTATTATCATTGCTCACCAAATCAGATAACGCAAGCTGTGATAAGCTTCTTTTCAAAGTAAAAAATTTAAGAGAAAGATCGTCCTCACCATTGAGACCAGTGAAGTTGGCCCAGTCCAGCAGAGACGAGTTGAAAGACGGGATGGAGGAGATGTTGAAGAACAGTCCTCTGGTTCTCGGAGTGAAGCTGAGAGTAGATATTGGAGTTCCTCGCTCGACCAGGGTGGAAGAAATTATTTCCTTAATTCAGTCCTATTGGAAACAATCACGAAAATGGCAATAAAAGTCCATTCAGGCAGAAGAAGGAAACTTTTCTCATTAGTTGTCAGCACTCGGAGGGATGTCTCGATGAAGGGGGGCGCCCCTCTTTCATCCTTCTGTTGTTCTTCTCTTGTGGAACGTGTTAAATTCGTCTTCGTCTTTTGTCCTTTGTTGTGGAGTCACATAACTTCACACACGTTTGTCCTTCTGCACAATAACACCTCGCTGGTGTGAAAGAATCTGGCTATCTGATGACCCTCCTGAATCGCTGCTCTTTTTCCCCACCCCTCCCACTTTCGCTCGTTCCGTCTCGCTCTCCCTCCTCCCTCACCCCTCCCTCTCCTCTTCCTATCCTCTGGCTTCCTGTGATGGTGTGATTGAGTCCCCAGGGGCCACCGAAAGAGGGGAGAGCAGGTGCTGTTGGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU490202 lncRNA upstream 8338 15221621 ~ 15222701 (+) True G426941
TU490187 lncRNA upstream 28053 15202649 ~ 15202986 (+) True G426930
TU490186 lncRNA upstream 30910 15199864 ~ 15200129 (+) True G426929
TU490183 lncRNA upstream 36350 15194309 ~ 15194689 (+) True G426928
TU490182 lncRNA upstream 36394 15194309 ~ 15194645 (+) False G426928
TU490212 lncRNA downstream 19342 15253925 ~ 15255239 (+) True G426951
TU490192 lncRNA downstream 87433 15322016 ~ 15323585 (+) False G426933
TU490193 lncRNA downstream 87433 15322016 ~ 15333685 (+) False G426933
TU490190 lncRNA downstream 93843 15328426 ~ 15333685 (+) True G426933
TU490188 lncRNA downstream 104711 15339294 ~ 15341816 (+) True G426931
CI01000304_15148523_15151340.mRNA mRNA upstream 79644 15147834 ~ 15151395 (+) True CI01000304_15148523_15151340
CI01000304_15140709_15147357.mRNA mRNA upstream 83482 15140561 ~ 15147557 (+) True CI01000304_15140709_15147357
CI01000304_15047768_15063987.mRNA mRNA upstream 166869 15047768 ~ 15064170 (+) True CI01000304_15047768_15063987
CI01000304_15040739_15045239.mRNA mRNA upstream 185782 15040552 ~ 15045257 (+) True CI01000304_15040739_15045239
CI01000304_15034188_15038152.mRNA mRNA upstream 192541 15032217 ~ 15038498 (+) False CI01000304_15034188_15038152
CI01000304_15265823_15269133.mRNA mRNA downstream 30385 15264968 ~ 15269591 (+) True CI01000304_15265823_15269133
CI01000304_15315146_15318470.mRNA mRNA downstream 80563 15315146 ~ 15319987 (+) True CI01000304_15315146_15318470
CI01000304_15348138_15379777.mRNA mRNA downstream 113375 15347958 ~ 15380003 (+) True CI01000304_15348138_15379777
CI01000304_15423818_15456305.mRNA mRNA downstream 187028 15421611 ~ 15456881 (+) True CI01000304_15423818_15456305
CI01000304_15462162_15465511.mRNA mRNA downstream 227579 15462162 ~ 15465511 (+) True CI01000304_15462162_15465511
TU490061 other upstream 280447 14948890 ~ 14950592 (+) True G426828
TU489538 other upstream 900153 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 1652192 13556451 ~ 13573943 (+) True G426349
TU488858 other upstream 2791953 12436554 ~ 12436605 (+) True G425718
TU491290 other downstream 650871 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 848647 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 1270279 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 1521363 16755946 ~ 16761111 (+) True G428157
TU491628 other downstream 1776147 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302

Expression Profile