RNA id: TCONS_00019649


Basic Information

Item Value
RNA id TCONS_00019649
length 443
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_009842
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20161805 ~ 20164454 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACAGAGGCAAATCGAAGGCAGACTGACCCGCGATCACAGGCGCTGCAGACATGTTGACAGTACTGGCCCTCATGACACTACTGATGGTTTCTGTTGAGTCGGATCTCTCCAATGAAGAGTGGAAGTCTCTAAGTAACCCACAGAGCCGGACCCTGTTTTTCCGGATCCTGCAGTCATATCTTGAAGGTAGAGAGAGTGAAGCTCAAGCCATGGCCAGAAAAACAAACTTAAAGGAGAACAAAAACAGCAACATGGAAAACAATGGTTATGACAAGTACAACCTCTTTCTTCATAATGACATTAATGATGTTTAAGGAAAGATTTTATCTGAATTTCATTACGTCGAACGTGTAAATCCGGTTTTGTTGCAGATCTTGATAGTTTAGGAAGTGCTGAAATCTGTAATGGTGTTTTGcgtattaaaattaaaatctgaaatgtc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000192146

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019646 lncRNA upstream 352688 19807943 ~ 19809117 (+) True XLOC_009840
TCONS_00021706 lncRNA upstream 352732 19807084 ~ 19809073 (+) False XLOC_009840
TCONS_00021707 lncRNA upstream 352732 19807943 ~ 19809073 (+) False XLOC_009840
TCONS_00021918 lncRNA upstream 352897 19805835 ~ 19808908 (+) False XLOC_009840
TCONS_00019645 lncRNA upstream 354672 19805021 ~ 19807133 (+) False XLOC_009840
TCONS_00021919 lncRNA downstream 365671 20530125 ~ 20531772 (+) True XLOC_009847
TCONS_00021920 lncRNA downstream 520486 20684940 ~ 20695517 (+) False XLOC_009848
TCONS_00021708 lncRNA downstream 524462 20688916 ~ 20695517 (+) True XLOC_009848
TCONS_00019660 lncRNA downstream 706561 20871015 ~ 20880205 (+) False XLOC_009850
TCONS_00019662 lncRNA downstream 706590 20871044 ~ 20887424 (+) False XLOC_009850
TCONS_00019648 mRNA upstream 6946 20056030 ~ 20154859 (+) True XLOC_009841
TCONS_00019647 mRNA upstream 10058 20055878 ~ 20151747 (+) False XLOC_009841
TCONS_00019644 mRNA upstream 427656 19732543 ~ 19734149 (+) True XLOC_009839
TCONS_00019643 mRNA upstream 427797 19732543 ~ 19734008 (+) False XLOC_009839
TCONS_00019640 mRNA upstream 480523 19677484 ~ 19681282 (+) True XLOC_009836
TCONS_00019650 mRNA downstream 3357 20167811 ~ 20194385 (+) False XLOC_009843
TCONS_00019652 mRNA downstream 33610 20198064 ~ 20238985 (+) False XLOC_009844
TCONS_00019653 mRNA downstream 55771 20220225 ~ 20234554 (+) True XLOC_009844
TCONS_00019654 mRNA downstream 130522 20294976 ~ 20305104 (+) False XLOC_009845
TCONS_00019656 mRNA downstream 332237 20496691 ~ 20515806 (+) False XLOC_009846
TCONS_00019642 other upstream 457267 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019630 other upstream 1033334 19065345 ~ 19128471 (+) False XLOC_009830
TCONS_00019610 other upstream 2590871 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019609 other upstream 2644723 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019587 other upstream 4007347 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019651 other downstream 3380 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019655 other downstream 132369 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019658 other downstream 332319 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019667 other downstream 748959 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019682 other downstream 1534552 21699006 ~ 21703679 (+) False XLOC_009863

Expression Profile

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