RNA id: CI01000304_15322368_15331609.mRNA



Basic Information


Item Value
RNA id CI01000304_15322368_15331609.mRNA
length 1872
RNA type mRNA
GC content 0.46
exon number 8
gene id CI01000304_15322368_15331609
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15321790 ~ 15331739 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACTTTCAGCGTTTTATGTTTTAGATGGTGATTTGAGATGTTGAATGACATATTGACAATTACTATATTTTTAATCAGGGATTGCTGCAGCGCCGAACTCCACGTGACTGTGCGATCAAGAGGGCATCAGGATGGAGGCCCCTCTGGTGTGCCTGGATGAGGAATTCGAGGATCTGCGGCCCTGCAAGATGGAGGAGCTTGAATCTGAGCAGCCTCCCTGCCGGCCTCACAAAACAATTCCTCTGGCCCCGCTGTGCCGTGAAGACTTCTCCGAGCTAGAGAACTTCTCTGAGATGATGAGCTTCAAGTCCATGGAGGACCTGGTCAATGAATTTGACGAAAAGCTGAACGTGTGCTTCCACAATTACAACACCAAAACAGAAGGCCTGGCACCCATACGCAACCAATCACATGCCGAGGAGGATGAGGAGAGGCTTCAAGATGAAGACGTGTGGGATGCTCTGACTGACAACTACATCCCTTCCTCTGTGTCCAGCTGGGACGACCCCACCTCAGAAACGCTGAATGGCAACCTCTCAGATCAGGAGATACATGAAAAAGATGAGGATGAGATGAACGAGAAGAACGAAAATGCCAACTGTCTGAGTGAAGAACCTCTGATTACAGCTGATCAGGTGATTGAGGAGATTGTGGAGATGATGGAAAACTCACCAGATCCTGGAGAGACAGAGGAAGAGGAGGATGATGATATCGGGGTTTCTTCCTCTAAAAGCAGCCCCTCCCTACTGGAGGAGATCCGCATGCTGTCTCAGGCCTCCAACAACAACTGCTCTTATGAAGGTCTGAGGCTGATGCCAAGCTCGGCGCTGCTTGACATCTTGTGTCGGATGGAGGCGGCGATACGAGAGTATTCGGAGGAACTGGTGGCTCAGCTGGCCCGGAGGGATGAGCTGGAGTTTGAGAAAGAGGTGAAGAACACCTTCATCACAGCTCTAATGGAGGTCCAGAACAGACAGAAGGAGCAAAGGGAGCTGAGCAAGCGCAGGCGTAAGGACAAGGCCATGAGTCTACAAGCAACAACCCGCTCCGAGAAGACTGGGACCATGCCTGCGAAACGCTTCAGCATGGAGGGTCTGTCCAACATCCTGCAGACAGGGATCAGACAGACCTTTGGGACCTCAGGGACAGAAAGACAGTACCTAAACACAGTCATCCCATATGAGAAAAAAGGGACTCCTCCATCTGTGGATGACTTGCAAATGCTCACAAAAATTCTCCAGCCCAGCTGCATGAGCTCCCTTACCCAGTATCAGCGAGGGACCCTGAACATCTAACCATCCTTCTCTTGCTTATCTAATGACCTTTGACCTTGCTCATCTCACTGCCCTTCCTGTATTCACATATCCATGAGGTTCATACCACAACGCCTGGTGCTTTACATGTTTTCTACTATGTACGTTATTTCGGGCCAAAAGCCATATGGAACGTGTAAGGATAACAGGTGAACTATAATCAGTTTAACTCTACAATCAGGTACTATTTTTATTTTTAAGGATATGCATAACAACATAATACTCGACCATTCACATCCATTCTGAACACAGGTGATGATGAGAAGGGCATTATTCACAATCTTCTTAAGGCGCAGATGCATTGATTTCGAGAGCACATTTGAAAATAATCCATCCAAACATTCTGCTTTTTGCCGTTTTAGTATTGTGGCTTCATTTCAGCCAAGGTTGGTTGAAGATACAGCATGTTTTAGTGTTCTACATTAATGCCAAGTTATAGGGAGAAACCTTGTGACTTTTTTTATTTTGGGTAACCTGAGTTTTGTTTTTCATCCTATGTATGAAATATACAGTTCTACATAAAGTGTTTTTTTTTTTTGATGATCCATCTGTCTAATAAA

Function


GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU491060 lncRNA downstream 46121 15275216 ~ 15275669 (-) True G427657
TU491030 lncRNA downstream 118289 15203264 ~ 15203501 (-) True G427632
TU491029 lncRNA downstream 127131 15194276 ~ 15194659 (-) True G427631
TU490983 lncRNA downstream 406119 14915463 ~ 14915671 (-) True G427588
TU490978 lncRNA downstream 459922 14861400 ~ 14861868 (-) True G427583
TU491836 lncRNA upstream 134186 15465925 ~ 15466511 (-) True G428340
TU491876 lncRNA upstream 155640 15487379 ~ 15487595 (-) True G428376
TU491877 lncRNA upstream 156188 15487927 ~ 15488140 (-) True G428377
TU491878 lncRNA upstream 156718 15488457 ~ 15488714 (-) True G428378
TU491879 lncRNA upstream 158070 15489809 ~ 15490014 (-) True G428379
CI01000304_15132805_15136196.mRNA mRNA downstream 185594 15132227 ~ 15136196 (-) True CI01000304_15132805_15136196
CI01000304_15075003_15110723.mRNA mRNA downstream 210794 15074301 ~ 15110996 (-) True CI01000304_15075003_15110723
CI01000304_14957226_14983228.mRNA mRNA downstream 338562 14956603 ~ 14983228 (-) True CI01000304_14957226_14983228
CI01000304_14949765_14955677.mRNA mRNA downstream 366113 14949187 ~ 14955677 (-) True CI01000304_14949765_14955677
CI01000304_14834446_14835469.mRNA mRNA downstream 486241 14834414 ~ 14835549 (-) True CI01000304_14834446_14835469
CI01000304_15341701_15346353.mRNA mRNA upstream 8826 15340565 ~ 15347178 (-) True CI01000304_15341701_15346353
CI01000304_15584327_15694046.mRNA mRNA upstream 252588 15584327 ~ 15694046 (-) True CI01000304_15584327_15694046
CI01000304_15703390_15711806.mRNA mRNA upstream 371433 15703172 ~ 15712119 (-) True CI01000304_15703390_15711806
CI01000304_15715861_15722546.mRNA mRNA upstream 383685 15715424 ~ 15722546 (-) True CI01000304_15715861_15722546
CI01000304_15755554_15770449.mRNA mRNA upstream 422737 15754476 ~ 15770768 (-) False CI01000304_15755554_15770449
TU490768 other downstream 60385 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 959898 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 1034186 14283671 ~ 14286873 (-) True G427362
TU490767 other downstream 1052219 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490643 other downstream 1113491 14189468 ~ 14208299 (-) False G427309
TU492197 other upstream 1447625 16780110 ~ 16780959 (-) True G428665
TU492202 other upstream 1522826 16867107 ~ 16867238 (-) True G428668
TU492948 other upstream 2592124 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 2905980 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 3254703 18586442 ~ 18591856 (-) False G429673

Expression Profile