RNA id: CI01000304_15794739_15795184.mRNA



Basic Information


Item Value
RNA id CI01000304_15794739_15795184.mRNA
length 1655
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000304_15794739_15795184
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15794480 ~ 15796217 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAACGTAACCCCTTCCCACAGTTCTCGCCCAGAATTCAAAACACCGCGATATCATACTGCTCGCTACACTACACTAGGCTGTTCACATTTGAATGTATATGAAGATGTAGACAGGTGTGTCTCGGCATATGGCGATGGCGCACACAACTGCCGACATCTTGAGAGAAAAAGGTAACCGTGTTGCATGAAACATGCATGGAATCAAACCCAGTCATGCTCAGTTATCTCGTCGTCCAGCGCTTGATACTGGCGACATGGATGCTGTATGCTTACTCAGATTACAAACTGATAAGCGTGCGATCATCTCAGATGAATATCGTTAACAACTGATCAATAAGAAAAGGGTACCGTCAAAATGATTATGACGGAGCCCTACGCAAAATACGGAGAATACAGGTGCTCGTACCCCTTCAGAGGATTAAAGACATGAGTAAAGGGGGTCACTGGAGAACGGAGGGTGTAGCCTATTCAGAAAAATGGACTACAAATATCTGCTTGCATTTGTACTATAGTATGAACGCATTAAAATACATTTTTAAAAAAAAGTATTTTTTTATATCAGAATGGCTTTAACAGCTGTCATACTTTTCCCTATATATCTGTTATTGATATCATTGTTATAATATCAATAATTATATATTAAAATCTGACAATATAATAATAACGATTATTAATACTATTCAAATTACTGGCACACCGGTAAACATATAGTAGCCTGACGCATGAACTATGACAGTTTGGAAAAGCTCATATTTTAGTCTTTAATGTGTCCAGACTAAAACTTTACCTACGAAACATTTAGATCTAGAACAGTGTGAAACTGTGAAGTTCCCTACAGTAATAACATCCGACATTGTGCTTCAGTTATTAAGATATGTTGACAATAACTGACACACACAATAACTGTGCAGGTCACTTCCATGCAATTTGAGCACGGGACCAGAAATTAGTTTCCTTTTGTCCTTCGCCCTCCTATATTTATTCTTACGCTCTCTAATGTTGTAAACTCAACATACGCATAGTAAGTGAAGAAATGAAGCGAGGCGGCGCATCGGTACTTAACTATTTACACAGGTGCTGGAGACACAGGTCGAGGCATTCCCCTTCCACTTCGTCCTCCGAGATGAGGTCCGACAAGGGGCGCATAGGTAGAGCCGGCCATCGCTTCTCATTCCTGGATAGACCAGAGACAGCTGGAGCCGGGCAAGAAGTCTACACTACTTTGAATCAGAGGCTGAAGCGGCTCTGTAGTCGCGCGAGTTGGGGAGGGCACGCGCGCGTGAACAGAGAGGGAGTCACACAACAGACCGACGTGACGCCACAAGGGGCGGGGTATAATGGAGATGAGGGGGGCGAATTAACCTTTCCATTAACCAATTTAATTCCATATTTGTGACGAAAATGAACTTTTACATTAAAGGGTCTAGAGTATTTTAGATTGAACGTTTTATTGACCTGGCGTGAATCACGTGACCCGAGCGGTTTCATTCCAGTTGGCTCTTCTGAAAGATGTGTCAAAGTGCCATAAAAGGAAGAAACATGTCATAATACAGATACGCTTATAAAGTTTGGGGCATATAATATTTGAATGTGGCATTTGTGACCAGTGGAAACACCAGAGAATGTAGTTTACCACCAGTTAGCTTACAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU491926 lncRNA downstream 39293 15754452 ~ 15755187 (-) True CI01000304_15755554_15770449
TU491966 lncRNA downstream 42937 15751343 ~ 15751543 (-) True G428451
TU491965 lncRNA downstream 43583 15749584 ~ 15750897 (-) True G428450
TU491946 lncRNA downstream 220447 15573732 ~ 15574033 (-) True G428432
TU491886 lncRNA downstream 277790 15516463 ~ 15516690 (-) True G428385
TU491925 lncRNA upstream 4712 15800929 ~ 15806758 (-) True G428411
TU491919 lncRNA upstream 243261 16039478 ~ 16042713 (-) True G428405
TU492038 lncRNA upstream 325981 16122198 ~ 16122496 (-) True G428517
TU492040 lncRNA upstream 333497 16129714 ~ 16130055 (-) True G428519
TU492018 lncRNA upstream 336422 16132639 ~ 16137401 (-) True G428500
CI01000304_15782838_15784193.mRNA mRNA downstream 10287 15782727 ~ 15784193 (-) True CI01000304_15782838_15784193
CI01000304_15755554_15770449.mRNA mRNA downstream 23712 15754476 ~ 15770768 (-) False CI01000304_15755554_15770449
CI01000304_15715861_15722546.mRNA mRNA downstream 71934 15715424 ~ 15722546 (-) True CI01000304_15715861_15722546
CI01000304_15703390_15711806.mRNA mRNA downstream 82361 15703172 ~ 15712119 (-) True CI01000304_15703390_15711806
CI01000304_15584327_15694046.mRNA mRNA downstream 100434 15584327 ~ 15694046 (-) True CI01000304_15584327_15694046
CI01000304_15859896_15879052.mRNA mRNA upstream 62900 15859117 ~ 15879376 (-) True CI01000304_15859896_15879052
CI01000304_15882316_15888812.mRNA mRNA upstream 85465 15881682 ~ 15888812 (-) True CI01000304_15882316_15888812
CI01000304_15891065_15894363.mRNA mRNA upstream 94586 15890803 ~ 15894363 (-) True CI01000304_15891065_15894363
CI01000304_15903075_15957836.mRNA mRNA upstream 106858 15903075 ~ 15957836 (-) True CI01000304_15903075_15957836
CI01000304_15986032_15996763.mRNA mRNA upstream 189546 15985763 ~ 15996763 (-) True CI01000304_15986032_15996763
TU490768 other downstream 533075 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 1432588 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 1506876 14283671 ~ 14286873 (-) True G427362
TU490767 other downstream 1524909 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490643 other downstream 1586181 14189468 ~ 14208299 (-) False G427309
TU492197 other upstream 983147 16780110 ~ 16780959 (-) True G428665
TU492202 other upstream 1058348 16867107 ~ 16867238 (-) True G428668
TU492948 other upstream 2127646 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 2441502 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 2790225 18586442 ~ 18591856 (-) False G429673

Expression Profile