RNA id: CI01000304_16044458_16066649.mRNA



Basic Information


Item Value
RNA id CI01000304_16044458_16066649.mRNA
length 978
RNA type mRNA
GC content 0.54
exon number 11
gene id CI01000304_16044458_16066649
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16044458 ~ 16066649 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCTCAGCAGCTATTTATCAGGTTCCAGTGAGACTGCAGCGCACAGTGTCCGAACACAACACTGGAGCCAACACACTCAACAGGAACTGGTGCCAGTACACAGTACAGAAGACCATTTCATGTCAGACACAAAATGGGACAGAGACTGTTGTTCAGCGACTGTTTCAGAGTTGCCGATGGCCTGGACCGTGTTCAAACCTCATCAGCTACAGAACTCTGGTGAGACCTGTGTACAGAGTGACCTACAGGAAAATCACTTCTCTGGAATGGCGATGCTGTCCAGGATTCCATGGGGAAGACTGCAGAGAGGAGTGCATGAACTGTACTGGTTATGCTGACATCAAAGAGCGCTTGAGTGTCATTGAAGCTCAGATAATGTTACTGAGAGATGCCGAGGCACCCCCTCTCCCTCTGTCCAGCCAATCACCTGAGGGAACAGCTGATAATGAGGTGGATAGGGCACACCCCTCACCAATAACACCCAAGGCCATTGGCCGACCAGGACCAAGAGGACAACCAGGACCTGTTGGTCCCCCAGGTCCCCCTGGGCCTCCTGGACCTTTAGGAAAGACAGGGTTTTCTGGAAAACCTGGTCCTATAGGACCTAGAGGACCTCAAGGGCTACAAGGTCCACCAGGAGAAAGAGGCCTTCCTGGGCCACCGGGGCCTGCAGCATCTACTCCCTTCTCCATCAGGGGAGATGTTTTCACTCTAATGGCTAAACAACATGATGCGGATAGTGACTTTGCTGCCTATCGTGACCTGCAGACTTTACTTGGTCCCCCCGGGCCCTCCGGCCCTCCTGGTCCACCAGGCACACCAGGTGACAGGGGACCCAAAGGAGATCCAGGAGAAAGAGGAGTTGCAGGTCCTAAAGGTGAGCCGGGAGAGATTCCGGGGGAGGTGCAGCAGTTAAGGGAAGCGCTGAAGATTCTGGCCGAGAGGGTTCTCATTCTAGAACACATGATCGGCATTCATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU491919 lncRNA downstream 1745 16039478 ~ 16042713 (-) True G428405
TU491925 lncRNA downstream 237700 15800929 ~ 15806758 (-) True G428411
TU491926 lncRNA downstream 289271 15754452 ~ 15755187 (-) True CI01000304_15755554_15770449
TU491966 lncRNA downstream 292915 15751343 ~ 15751543 (-) True G428451
TU491965 lncRNA downstream 293561 15749584 ~ 15750897 (-) True G428450
TU492038 lncRNA upstream 55549 16122198 ~ 16122496 (-) True G428517
TU492040 lncRNA upstream 63065 16129714 ~ 16130055 (-) True G428519
TU492018 lncRNA upstream 65990 16132639 ~ 16137401 (-) True G428500
TU492042 lncRNA upstream 79667 16146316 ~ 16153240 (-) True G428521
TU492059 lncRNA upstream 131168 16197817 ~ 16199521 (-) True G428533
CI01000304_16032454_16034363.mRNA mRNA downstream 10006 16031992 ~ 16034452 (-) True CI01000304_16032454_16034363
CI01000304_15986032_15996763.mRNA mRNA downstream 47695 15985763 ~ 15996763 (-) True CI01000304_15986032_15996763
CI01000304_15903075_15957836.mRNA mRNA downstream 86622 15903075 ~ 15957836 (-) True CI01000304_15903075_15957836
CI01000304_15891065_15894363.mRNA mRNA downstream 150095 15890803 ~ 15894363 (-) True CI01000304_15891065_15894363
CI01000304_15882316_15888812.mRNA mRNA downstream 155646 15881682 ~ 15888812 (-) True CI01000304_15882316_15888812
CI01000304_16067926_16072192.mRNA mRNA upstream 1238 16067887 ~ 16072192 (-) True CI01000304_16067926_16072192
CI01000304_16073177_16076377.mRNA mRNA upstream 6444 16073093 ~ 16076440 (-) True CI01000304_16073177_16076377
CI01000304_16077939_16106746.mRNA mRNA upstream 10843 16077492 ~ 16106983 (-) True CI01000304_16077939_16106746
CI01000304_16123390_16127834.mRNA mRNA upstream 56513 16123162 ~ 16128334 (-) True CI01000304_16123390_16127834
CI01000304_16202982_16207060.mRNA mRNA upstream 136171 16202820 ~ 16207117 (-) True CI01000304_16202982_16207060
TU490768 other downstream 783053 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 1682566 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 1756854 14283671 ~ 14286873 (-) True G427362
TU490767 other downstream 1774887 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490643 other downstream 1836159 14189468 ~ 14208299 (-) False G427309
TU492197 other upstream 712715 16780110 ~ 16780959 (-) True G428665
TU492202 other upstream 787916 16867107 ~ 16867238 (-) True G428668
TU492948 other upstream 1857214 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 2171070 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 2519793 18586442 ~ 18591856 (-) False G429673

Expression Profile